Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1778 |
Symbol | htpX |
ID | 1183415 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1947589 |
End bp | 1948476 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637393150 |
Product | heat shock protein HtpX |
Protein accession | NP_791603 |
Protein GI | 28868984 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0501] Zn-dependent protease with chaperone function |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.463341 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGCGCA TTTTGCTGTT TTTGGCCACT AACCTTGCGG TCGTGCTGAT TGCCAGCATC ACCCTGAGCC TTTTTGGCTT CAATGGGTTC ATGGCGGCCA ACGGGGTTGA TCTGAACCTC AATCAGCTGC TGGTCTTCTG CGCTGTGTTC GGTTTCGCCG GCTCGCTGTT CTCGCTGTTC ATCTCCAAGT GGATGGCGAA AATGAGCACC GGTACTCAGA TCATCACCCA GCCACGTACT CGCCATGAGC AATGGTTACT GCAGACCGTT GAACAACTGT CCCGCGATGC GGGCATCAAG ATGCCGGAAG TCGGTATTTT TCCGGCGTAT GAAGCCAATG CGTTCGCTAC CGGCTGGAAC AAGAACGACG CACTGGTTGC CGTCAGCCAG GGCCTGCTCG AGCGGTTCTC GCCAGATGAG GTAAAGGCTG TACTGGCGCA CGAAATCGGC CATGTTGCCA ACGGCGACAT GGTCACGCTG GCCCTGGTGC AGGGTGTGGT GAACACCTTT GTGATGTTCT TCGCCCGTAT CATCGGCAAT TTTGTCGACA AAGTGATCTT CAAGACCGAG AACGGTCAGG GTATCGCCTA CTACATCACG ACGATCTTTG CCGAGCTGGT ACTGGGCTTT CTGGCCAGTG CGATTGTCAT GTGGTTCTCG CGCAAACGCG AATTCCGCGC TGACGATGCC GGTGCACGAC TGGCCGGTAC GGACGCGATG ATCGGTGCGC TGCAACGCTT GCGCTCGGAA CAGGGCGTAC CGGTGAACAT GCCTGACAGC CTGACGGCGT TCGGTATCAA CGCCGGCCTC AAGAAAGGCC TCGCCGGCCT GTTCATGAGC CACCCGCCGC TGGAACAACG CATCGAGGCA CTGCGCCGCC GCGGTTGA
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Protein sequence | MMRILLFLAT NLAVVLIASI TLSLFGFNGF MAANGVDLNL NQLLVFCAVF GFAGSLFSLF ISKWMAKMST GTQIITQPRT RHEQWLLQTV EQLSRDAGIK MPEVGIFPAY EANAFATGWN KNDALVAVSQ GLLERFSPDE VKAVLAHEIG HVANGDMVTL ALVQGVVNTF VMFFARIIGN FVDKVIFKTE NGQGIAYYIT TIFAELVLGF LASAIVMWFS RKREFRADDA GARLAGTDAM IGALQRLRSE QGVPVNMPDS LTAFGINAGL KKGLAGLFMS HPPLEQRIEA LRRRG
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