| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1776 |
|---|
| Symbol | |
|---|
| ID | 1183413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1945772 |
|---|
| End bp | 1946539 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637393148 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_791601 |
|---|
| Protein GI | 28868982 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3384] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCCCA GCCTGTTTAT TTCCCACGGC TCGCCCACGC TCGCGCTGGA GCCCGGCGAA
AGCGGGCCGG CGCTGGCACA ACTGGCAGCC AGCCTGCCCA GGCCTCGCGC CATCGTGATG
GTATCCGCCC ATTGGGAAAG CCACGAGCTT ATCGTCAACG GCAACCCACA GCCCGAGACC
TGGCATGACT TCGGCGGTTT TGCAGCGGAG CTGTTTGCGA TGCAATACCC CGCACCCGGG
CTGCCGGAGC TGACCCGGAC GATAGTCGAA CTGCTCACAG CCAATGGCCT GCCTGCCCGC
ATCGATAGCA GACGCCCCTT CGACCACGGT GTCTGGGTGC CGCTGTCGCT GATGTACCCA
CAGGCTGACA TACCGGTGGT GCAAGTTTCA CTGCCCAGTC GCCAGGGCCC GGCGTTGCAG
ACACAGGTGG GCCGGGCACT GGCCGGCTTG CGCGAACAGG GTGTGCTGGT GATCGGCTCG
GGCAGCATCA CGCATAACCT TTACGATCTG GACTGGAGCG CCGCGCCTGA CAGGGTCGAG
CCCTGGGCCG CGGAGTTTCG CGACTGGATA ATCGACAAGC TGCAAAGCAA TGATGAAGCC
GCCCTGCACC ACTACCGCAC GCAGGCGCCT CATGCGGTGC GAGCACACCC CAGTGACGAA
CACCTGCTGC CGCTTTATTT CGCACGCGGC GCAGGCGGTG CGTTCAGCAT CGCTTATCAG
GGCTTTACCA TGGGCGCACT GGGCATGGAC ATCTATCGGT TCGACTGA
|
|---|
| Protein sequence | MFPSLFISHG SPTLALEPGE SGPALAQLAA SLPRPRAIVM VSAHWESHEL IVNGNPQPET
WHDFGGFAAE LFAMQYPAPG LPELTRTIVE LLTANGLPAR IDSRRPFDHG VWVPLSLMYP
QADIPVVQVS LPSRQGPALQ TQVGRALAGL REQGVLVIGS GSITHNLYDL DWSAAPDRVE
PWAAEFRDWI IDKLQSNDEA ALHHYRTQAP HAVRAHPSDE HLLPLYFARG AGGAFSIAYQ
GFTMGALGMD IYRFD
|
|---|
| |