| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1756 |
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| Symbol | wbpM |
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| ID | 1183393 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1927805 |
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| End bp | 1929799 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637393128 |
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| Product | nucleotide sugar epimerase/dehydratase WbpM |
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| Protein accession | NP_791581 |
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| Protein GI | 28868962 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0505797 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGGT TGCGAGCTAG TTTGCTGGCC CTACCACGCC GCAAAAAGCG AATAATCCAG
GTGGCTGCCG ACGTTCTTCT GGTCTGGCTT GCGCTGTGGA TGTCGTTTGT CGTGCGGCTG
GGCATTGACG AACTGATCAA TCCGCTGGAA AAGCACACTT GGCTTTTCAT CAGTGCGCCG
CTGGCGGCCA TTCCGTTGTT CATCCGTTTT GGCATGTACC GTGCGGTCAT GCGCTATTTT
GGCAACGACG CACTGATTGC GATCATCAAA GCCGTCACGA TGTCGTCGTT GATTCTCGGT
TGTATGGTGT ACGTATACAG CAATCACCAG CAACTGGTGC CACGCTCGGT CATCTTCAAC
TATTGGTGGC TGAGCCTGGT AATGATCGGC GGTCTGCGCC TGGCCATGCG GCAGTACTTC
CTCGGTGACT GGTTTGCGGC GGCGCAACAC GTACCGTTTG CCAAAAGCGA TAACGGCCTG
CAAAAAGTCG CCATCTACGG CGCAGGCGCG GCCGGCAACC AGTTGGTGGC TGCATTGCGT
ATGGGGCGTC TGATGCACCC TGTGGCATTC ATTGATGATG ACGAGTCGAT CTCCAACCGG
GTGATTTCCG GGCTGCAAGT CTACAAGCCT CGAAATATCC AGCGCATGAT CGATTCCACC
GGGGCTCAGG AAATACTCCT GGCCATCCCT TCGTCATCGC GCGGGCGTCG CCGGGAGATT
CTGGGGTTTC TGGAAGGCTT TCCGTTGCAC GTGCGAAGCG TCCCCGGTTT CATGGACCTG
GCGGCTGGCC GGGTCAAGGT TGACGACCTT CAGGAAGTCG ATATCGCCGA CCTTCTGGGA
CGAGACGCAG TGCCTGCCCG GGAAAACCTG CTGGAGCATT GCATCAAGGG CAAGACGGTG
CTGGTGACTG GCGCGGGCGG CTCGATCGGT TCCGAGTTGT GCCGGCAGAT ACTGCTTCTG
CAGCCTGTCC AGTTGCTGTT GCTCGACCAC AGCGAATTCA ATCTTTACAG CATTCTGTCC
GAGCTTGAAC AGCGTTCTGC CCGTGAGTCT CTTTCGGTCA AGTTGCTGCC CATACTCGGT
TCGGTGCGCA ATCACCCCAA GCTGCTGTCG ATCATGAAAA CCTGGAAGGT CGACACGGTC
TACCATGCGG CCGCCTACAA GCACGTACCG ATGGTTGAGC ACAACATTGC CGAAGGTGTG
ATCAATAACG TCGTCGGTAC GCTCAATACC GCGCAGGCGG CGTTGCAGGC GGGGGTTTCC
AACTTTGTCC TGATTTCCAC CGACAAGGCG GTCCGTCCAA CCAACGTCAT GGGCAGCACC
AAGCGCCTTG CCGAGTTGAT CCTGCAGGCA CTGAGCCGCG AGACCGCGCC GGTGATCTTC
GGCGACAAGG CCAACGTCTA TCAGGTCAAC AAGACCCGTT TCACGATGGT TCGTTTCGGC
AACGTGCTTG GCTCATCGGG CTCTGTGATT CCGCTGTTTC ACAAGCAGAT TCAGTCGGGC
GGGCCGCTGA CGGTGACTCA TCCCAAGATC ACCCGGTACT TCATGACCAT CCCCGAGGCC
GCTCAACTGG TTATTCAGGC GGGCTCGATG GGGCATGGCG GGGATGTGTT CGTTCTGGAC
ATGGGCGAGC CAGTCAAGAT TGTCGAACTG GCGGAGAAAA TGATCCACCT TTCCGGCCTG
GCCATCCGCT CCGAGAAAAA CCCGCATGGC GATATCTCCA TTGAGTTCAC CGGGCTGCGT
CCCGGTGAAA AGCTGTATGA AGAGCTGCTG ATCGGCGACA ACGTGGTCGC GACCGAACAC
CCAATGATCA TGAGCGCCAG CGAAGACTGT CTGGCGTGGG ATGTATTGAA AGGCCGGCTG
GTAAAACTGC TGGATGCCGT GGAGCGAGAC GATTACAACA GCGTGCGCCA GTTGCTGCGA
GAAACAGTCA GCGGTTATAC ACCAGAGGGT GAAATCGTTG ACTGGATGTA TCAGGAACGC
AGCGGCGAGC CTTGA
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| Protein sequence | MSRLRASLLA LPRRKKRIIQ VAADVLLVWL ALWMSFVVRL GIDELINPLE KHTWLFISAP
LAAIPLFIRF GMYRAVMRYF GNDALIAIIK AVTMSSLILG CMVYVYSNHQ QLVPRSVIFN
YWWLSLVMIG GLRLAMRQYF LGDWFAAAQH VPFAKSDNGL QKVAIYGAGA AGNQLVAALR
MGRLMHPVAF IDDDESISNR VISGLQVYKP RNIQRMIDST GAQEILLAIP SSSRGRRREI
LGFLEGFPLH VRSVPGFMDL AAGRVKVDDL QEVDIADLLG RDAVPARENL LEHCIKGKTV
LVTGAGGSIG SELCRQILLL QPVQLLLLDH SEFNLYSILS ELEQRSARES LSVKLLPILG
SVRNHPKLLS IMKTWKVDTV YHAAAYKHVP MVEHNIAEGV INNVVGTLNT AQAALQAGVS
NFVLISTDKA VRPTNVMGST KRLAELILQA LSRETAPVIF GDKANVYQVN KTRFTMVRFG
NVLGSSGSVI PLFHKQIQSG GPLTVTHPKI TRYFMTIPEA AQLVIQAGSM GHGGDVFVLD
MGEPVKIVEL AEKMIHLSGL AIRSEKNPHG DISIEFTGLR PGEKLYEELL IGDNVVATEH
PMIMSASEDC LAWDVLKGRL VKLLDAVERD DYNSVRQLLR ETVSGYTPEG EIVDWMYQER
SGEP
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