| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1748 |
|---|
| Symbol | |
|---|
| ID | 1183385 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1918702 |
|---|
| End bp | 1920309 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637393120 |
|---|
| Product | prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase family protein |
|---|
| Protein accession | NP_791573 |
|---|
| Protein GI | 28868954 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0287] Prephenate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0692741 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATTTCAG AGCAACCGGC CCGGCCGTTG ATCGGGCGGC TGGTGGTCGT GGGGCTCGGG
CTGATTGGCG GCTCGTTTGC CAAGGGCGTG CGCGAAAGCG GCCTGTGCCG TGAAGTGGTC
GGCGTCGATC TTGATCCGCG GTCGCGAAAG CTTGCGGTCG AGCTCGGGGT TGTCGATCGT
TGCGAGGCCG ATCTTGCCCT GGCCTGCCGG GGCGCCGACG TGATTCAGCT GGCGGTGCCT
ATTCTGGCGA TGGAAAAGCT CCTTGCGCTG CTCGCACCGC TGGATCTGGG GGGCGCCATT
CTCACTGACG TTGGCAGCGC CAAAGGCAAT GTGGTCAGGG CGGCCCATCA GGCGTTCGGC
CATATGCCGT CACGCTTTGT GCCTGGGCAT CCGATCGCCG GGTCCGAGCA GAGCGGCGTC
GAAGCTTCCA ACGCTGCGTT GTTCCGGCGT CACAAGGTCA TTCTGACCCC GCTGCCTGAA
ACCGACCCCG ACGCCGTCGC CGTTGTGCAT CGGTTGTGGT CTGCGCTGGG TGCTGATGTC
GAGCACATGC AGGTCGAGCG TCACGACGAC GTGCTGGCGG CGACCAGTCA TCTGCCGCAC
TTGCTGGCAT TCGGTCTGGT CGACTCATTG GCCAAACGTA ACGAAAACCT GGAAATATTC
CGCTATGCCG CTGGCGGCTT TCGTGACTTC ACGCGTATTG CGGGCAGCGA TCCGACCATG
TGGCACGACA TCTTCATGGC CAACCGTGAG TCGGTCCTGC GCACGCTGGA CAGTTTTCGC
AGTGACCTTG ATGCCCTGCG CGATGCTGTG GATGCTGGCG ATGGCGCGCA GTTGCTGGAG
GTATTCACTC GCGCGCGCAC GGCCAGAGAG CACTTCGGCA GAATTCTTGC CAGCCGTGCT
CGCGTCGATA TGACCTCTGC CGATCATCAT GAGGCGCCGG ATGACGTGCG GGTGCGCTCT
GCAGAGGGCG TCAGCCATCG TATCAAAGGG CCGACCGATG TCACGTCCGC TGTCCTGTTC
ATGGTCGCGA CGTCGATCAG TGAAGGGTGT GATCTGCTGC TCGAGGACGT TCGTGTCGGC
TCGATGTGTG AAGGAGCGAT CGACATTCTG CGTCTGATGG GCGGCGATGT TGTGCTGCAA
AATGTTCGCG AACTGGCAGA TGAGCGGCTG GCGGACCTGC ACGTGCGTTC GGCTCGGCTG
AAAGGCGCGG ATATCCCGGA GGCGCTGGTG ACGCTGGCGA TCGGCACCTT TCCGACGCTG
CTTATCGCCG CAGCCTGCGC AGAAGGGCGT ACCATTCTGC GCGGCGCAGA GACGTTGCAG
GCAGGCGAGT CGGAATGCGT CAGGCTTATG GCTGACGGTT TGACGGTGCT CGGTATCGAG
GCCGAACCTG TGCCGGATGG CATCATCATT GAGGGCGGTA CGCCGGGCGG CGGCGAGATT
GATGCGCGCG GCGATCAGCG TATTGTCATG GCGTTTCGTG TTGCATCGTT GCGGGCTTCG
GCGCCCATCC GTATTCATGA TTGTGCGGAC GCCGCCACAT TGTTTCCCCA TTTTCTGGCG
CTGTGCGCTC AAGTCGGCAT GCGTGTAGCG CAAGAGGACA TAAAGTGA
|
|---|
| Protein sequence | MISEQPARPL IGRLVVVGLG LIGGSFAKGV RESGLCREVV GVDLDPRSRK LAVELGVVDR
CEADLALACR GADVIQLAVP ILAMEKLLAL LAPLDLGGAI LTDVGSAKGN VVRAAHQAFG
HMPSRFVPGH PIAGSEQSGV EASNAALFRR HKVILTPLPE TDPDAVAVVH RLWSALGADV
EHMQVERHDD VLAATSHLPH LLAFGLVDSL AKRNENLEIF RYAAGGFRDF TRIAGSDPTM
WHDIFMANRE SVLRTLDSFR SDLDALRDAV DAGDGAQLLE VFTRARTARE HFGRILASRA
RVDMTSADHH EAPDDVRVRS AEGVSHRIKG PTDVTSAVLF MVATSISEGC DLLLEDVRVG
SMCEGAIDIL RLMGGDVVLQ NVRELADERL ADLHVRSARL KGADIPEALV TLAIGTFPTL
LIAAACAEGR TILRGAETLQ AGESECVRLM ADGLTVLGIE AEPVPDGIII EGGTPGGGEI
DARGDQRIVM AFRVASLRAS APIRIHDCAD AATLFPHFLA LCAQVGMRVA QEDIK
|
|---|
| |