| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1713 |
|---|
| Symbol | cobQ |
|---|
| ID | 1183350 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1882933 |
|---|
| End bp | 1884393 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637393085 |
|---|
| Product | cobyric acid synthase |
|---|
| Protein accession | NP_791538 |
|---|
| Protein GI | 28868919 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1492] Cobyric acid synthase |
|---|
| TIGRFAM ID | [TIGR00313] cobyric acid synthase CobQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGC TGATGGTGCA AGGCACCACT TCCGATGCCG GTAAGAGCAC GCTGGTGACG
GCACTGTGCC GCTGGCTGAC CCGCCAGGGC GTCAAGGTCG TGCCCTTCAA GCCGCAGAAC
ATGGCGCTCA ACAGTGCGGT GACGGCGGAT GGCGGCGAGA TCGGTCGTGC GCAGGCGGTA
CAGGCGCAGG CGTGCTTCCT GGCGCCGCAC ACCGACATGA ACCCGGTGCT GCTCAAGCCC
AACAGCGACA CCGGCGCGCA GGTCATTATT CATGGCCGCG CCGTCACCAC CATGAATGCG
GTGGCCTACC ACGGCTATAA AGAGATCGCC ATGCAGGCGG TGCTGGAGTC GCATCGTCGG
TTGAGCGAAA GCTACCCGGT GATCATGGTC GAAGGCGCGG GGTCGCCTGC TGAAATCAAC
CTGCGTGCCA ATGACATCGC CAACATGGGC TTTGCCGAGG CCGTGGACTG CCCGGTGCTG
TTGATTGCCG ACATCAATCG TGGCGGCGTG TTTGCTCATC TGGTCGGCAC GCTGGAGCTG
CTGTCGCCCA GCGAACAGGC GCGGGTCAAA GGCTTCATCA TCAACCGTTT TCGCGGCGAC
ATTGCCTTGC TGCAACCGGG GCTGGACTGG CTTGAAGCGC GCACCGGCAA ACCGGTGGTC
GGCGTGCTGC CCTACGTGAT GGACCTGCAC CTGGAGGCCG AAGACGGCCT TGATCAGCGC
CAGACCGACA AGGTCGAGCA GGTCCTGAAT GTGGTCGTGC CGGTGCTGCC GCGCATCAGT
AATCACACCG ATTTTGACCC GCTGCGCCTG CATCCGCAGG TCAACCTGCA ATTCATCGGC
CCGGGCCAAC CCATTCCGCC TGCCGACCTG ATCATTCTGC CCGGCTCGAA AAGCGTGCGC
AGCGACCTGA ATTACCTGCG CGCCAACGGC TGGGAAACGG CCATCGACCG GCATTTGCGT
TACGGCGGCA AGCTGATGGG CATCTGCGGC GGTCTGCAAA TGCTCGGCGA GCACCTGCAC
GACCCGCTGG GGCTGGAAGG CGCGGCGGGT TCCAGTGCCG GTCTGGGCCT GCTGGCGATG
AGCACGGTGC TGGAAACCGA AAAGCAATTG CGCAACGTGC GCGGACGCCT GACGCTGGAA
GACGCAGAAG TCAGCGGCTA TGAAATTCAT GCCGGCGTGA CCACGGGCGC GGCGCTGGAG
CAGGCTGCCG TTCAACTGGA CGATGGCCGT TGCGACGGCG CGCAGAGTGC CGACGGACAG
ATTCTCGGCA CTTACCTGCA CGGCCTGTTC GAGTCGCCTG CCGCCTGCAG CGCGCTGTTG
CGCTGGGCGG GGCTGGAAAA CGTCCAGTCG GTGGATTATC ACGCGTTGCG CGAGCGCGAC
ATCGAGCGGC TGGCGGACCT GGTGGAAAAG CATCTGGACG GCACCTTGCT CCGTGAGCTG
TGCGGCCTGG AGGCGACCTG A
|
|---|
| Protein sequence | MTTLMVQGTT SDAGKSTLVT ALCRWLTRQG VKVVPFKPQN MALNSAVTAD GGEIGRAQAV
QAQACFLAPH TDMNPVLLKP NSDTGAQVII HGRAVTTMNA VAYHGYKEIA MQAVLESHRR
LSESYPVIMV EGAGSPAEIN LRANDIANMG FAEAVDCPVL LIADINRGGV FAHLVGTLEL
LSPSEQARVK GFIINRFRGD IALLQPGLDW LEARTGKPVV GVLPYVMDLH LEAEDGLDQR
QTDKVEQVLN VVVPVLPRIS NHTDFDPLRL HPQVNLQFIG PGQPIPPADL IILPGSKSVR
SDLNYLRANG WETAIDRHLR YGGKLMGICG GLQMLGEHLH DPLGLEGAAG SSAGLGLLAM
STVLETEKQL RNVRGRLTLE DAEVSGYEIH AGVTTGAALE QAAVQLDDGR CDGAQSADGQ
ILGTYLHGLF ESPAACSALL RWAGLENVQS VDYHALRERD IERLADLVEK HLDGTLLREL
CGLEAT
|
|---|
| |