Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1705 |
Symbol | |
ID | 1183342 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1875154 |
End bp | 1875882 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637393077 |
Product | NLP/P60 family protein |
Protein accession | NP_791530 |
Protein GI | 28868911 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCCCATGC CCGTTGTTCG CTTCGCACCC CTCGTGCCTC TCGCACTCGT TACCTTCCTG TTCGGTTGCT CGGCCAATAT GCCGGTTGCA CAGCACGAGC AGGCTCAGCC GGTTCCCCGT TATCAGAACA CCGTCACTGC ACAGTCCGCA GCGCGCCGCG CTGATGCAGC AGTGCTGCAG GACGAGCTGG CGACCGAAGA CGAACTGAAC CAGTTCGCAG ACAACACCTC CTACAAACTG CCGGTTCTGG CCGACAGTAT TCTCGAACGC GGCAAGGCGC TGATCGGCAC GCGCTACAAG TTCGGCGGCA CGTCGACCTC GTCGGGCTTC GATTGCAGCG GTTTCATTGG TTATCTGTTT CGTGAAGAGG CCGGCATGAG CCTGCCACGT TCCACTCGCG AAATGATCAA CGTAGACGCC CCTCTGGTTT CACGCGGCAA CCTCAAGCCT GGCGATCTGC TGTTCTTCAG CACCCGCGGC AAGAAAAGTG TCGTGAGCCA TGCGGCAATC TACGCCGGCA ATCAGCAGTT CATTCATTCC AGCAGCCGCC GCGGCGGCGT GCGCATCGAC AGCCTTGATG ACGCCTACTG GAGCAGGACG TTCATCGAAG CCAAGCGGCC TCTGGCGATG GCACCGGGCA CGGTGGCTGT AAAGTCCACG CCTGTTGCAA CGCAGACAAC GGCCATGACT TCGACTACAG TCAAGTCCGC GCCCAAACGG CGTAAATAA
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Protein sequence | MPMPVVRFAP LVPLALVTFL FGCSANMPVA QHEQAQPVPR YQNTVTAQSA ARRADAAVLQ DELATEDELN QFADNTSYKL PVLADSILER GKALIGTRYK FGGTSTSSGF DCSGFIGYLF REEAGMSLPR STREMINVDA PLVSRGNLKP GDLLFFSTRG KKSVVSHAAI YAGNQQFIHS SSRRGGVRID SLDDAYWSRT FIEAKRPLAM APGTVAVKST PVATQTTAMT STTVKSAPKR RK
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