Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1691 |
Symbol | gacS |
ID | 1183328 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1858439 |
End bp | 1861192 |
Gene Length | 2754 bp |
Protein Length | 917 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637393063 |
Product | sensor histidine kinase/response regulator GacS |
Protein accession | NP_791516 |
Protein GI | 28868897 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCTGACCA AGCTGGGTAT AAAAGGCCGT GAGCTGCTAC TGACGATTCT GCCTGCCAGC CTGATGGCCG CGATGCTGGG TGGCTATTTC ACCTGGATGC AGTTGAGCGA ACTGCAAAGC CAGTTGCTGC TACGGGGTGA AATGATCGCT CAGGATCTGG CACCGCTGTC GGCCAGTGCA CTGGGGCGCA AGGACAAGGT GCTGTTGAGC CGCATCGCGA CACAGACACT GGAGCAGCCC GACGTGCGCG CCGTGTCGTT TCTGGATGTC GATCGCTCGC CACTGGCGCA TGCCGGCCCG ACGATGATCA GCCCCACGCC CATCGGCAAC AGCTCGCAGT TGCTCAACTC GACAGGCACT GACGCCACGC GCTATCTGCT GCCGGTGTTC GGCAATCAAC GCCACCTGAC CAGCCCGATC ATCCCCGCCG AAGCCGACAC CCTGATGGGC TGGGTGGACG TGGAAATTTC CCACAACGGC ACCTTGCTGC GCGGCTATCG AAGCCTGTTT GCCAGCCTGC TGCTGATTTT CACCGGGCTG GCCATTACCG CCGTCGTTGC CGTGCGCCTG AGCCGGACCA TCAACGGTCC GATGAGCCAG ATCAAGCAGG CTGTCTCGCA ACTCAAGGAC GGCAACCTCG AAACCCGCCT GCCGCCACTG GGCAGTCGCG AGCTCGACGA GCTGGCCTCG GGCATCAATC GCATGGCGGC CACCCTGCAG AATGCGCAGG AAGAACTGCA AATGAGCATC GACCAGGCCA CCGAAGACGT TCGGCAGAAC CTGGAAACCA TCGAGATTCA GAACATCGAA CTGGACCTGG CGCGCAAGGA AGCGCTGGAA GCCAGCCGGA TCAAGTCCGA ATTTCTGGCC AACATGAGCC ACGAGATCCG CACGCCGCTC AATGGCATTC TGGGCTTCAC CCATTTGCTG CAGAAAAGCG AGCTGACGCC GCGCCAGTTC GACTATCTGG CGACCATCGA GAAATCTGCC GACAACCTGT TGAGCATCAT CAACGAGATT CTCGACTTTT CGAAGATCGA GGCCGGCAAG CTGGTGCTCG ACAACATTCC GTTCAACCTG CGCGATCTGT TGCAGGACAC GCTGACCATT CTCGCGCCGG CGGCCCATGC CAAACATCTG GAGCTGGTCA GCCTGGTGTA CCGCGACACG CCGCTGGCGC TGTCTGGCGA CCCGCTGCGG TTGCGGCAGA TTCTGACCAA TCTGGTCAGC AACGCGATCA AGTTCACCCG CGAAGGCACC ATCGTTGCCC GCGCCATGCT TGAAGATGAA ACCGAAGAAC ACGCGCAATT GCGCATCAGT GTGCAGGACA CCGGGATCGG CCTGTCCAGT CAGGATGTGC GGGCGTTGTT TCAGGCCTTC AGCCAGGCTG ACAATTCACT CTCGCGCCAG CCAGGCGGCA CCGGTCTGGG GCTGGTGATT TCCAAACGGC TGATCGAGCA GATGGGCGGC GAAATCGGGG TCGACAGCAC CCCCGGCGAA GGCTCGGAGT TCTGGATCAG CCTGAAACTG CCCAAGGCCC GCGAAGACAA GGAAGAATCG CTCAATCTAC CGCTGGAAGG GTTGCGCGCT GCCGTGCTTG AGCACCATGA CCTCGCACGC CAGGCGCTGG AGCATCAACT GGAAGACTGC GGCCTGCACA CCGTGGTGTT CACTAACCTG GAAAACCTGC TCAACGGCGT GACCGCCGCC CATGAAACTC CGGCGGCGAT TGACCTGGCG GTGCTCGGCG TCACGACGCT GGAAATCTCC CCGGAACGCC TGCGTCAGCA CATCTGGGAT CTGGAAAACC TCAACTGCAA GGTGATGGTA CTGTGCCCGA CCACTGAATA CGCGCTGTTT CAGTTGGCGG TCCACGACGT CTACACCCAG TTGCAGGCCA AGCCCGCCTG CACCCGCAAA CTGCAAAAAG CCCTGTCCGA ACTGATCGCT CCACGCGCGA TACGTGCCGA CATCGCCCCG CCGCTGTCGA GCCGCGCACC CCGCGTGCTG TGCGTGGATG ACAACCCGGC CAATCTGCTG CTGGTGCAGA CTCTGCTTGA AGACATGGGG GCCGAGGTGA TGGCCGTTGA AGGCGGCTAT GCGGCGGTCA ATGCAGTGCA GCAGGAAGCG TTCGATCTGG TATTGATGGA CGTGCAGATG CCGGGCATGG ACGGGCGTCA GGCCACCGAA GCGATCCGCG CCTGGGAAGC CGAGCGCGGC CAGAGTTCTC TGCCGATCGT GGCCCTTACG GCCCACGCGA TGGCCAATGA AAAACGCTCG CTGCTGCAAA GCGGCATGGA CGACTACCTG ACCAAGCCGA TCAGCGAGCG GCAACTGGCG CAGGTGGTGC TCAAGTGGTC GGGGCTGGCA CTGCGCAACC CCGCGCCGGA ACGCCAGAAT GAATCACTCG AAGCCCACGT CGGGCCGCTG GTGCTCGACC CTGAAGAAGG GCTGCGCCTG GCTGCTGGCA AGGCGGACCT CGCCGCCGAC ATGCTGGCCA TGCTGCTCGC CTCACTGGAC GCCGACCGCG AAGCCATCCG CGTGGCGCGT GCCAGCCAGG ACGTACAGGC CCTGATCGAA CGCATCCACC GCCTGCACGG GGCCACACGT TACTGCGGCG TCCCGCAACT GCGCACCGCC TGCCAACGTG CCGAAACCCT GCTCAAACAG GACGCGCCGC ACACTGGCGA TGCCCTCGAC GACCTGGACA AAGCCATCGT GCGTCTGGAA ACAGAGGCGC GGGTGACAGC GTGA
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Protein sequence | MLTKLGIKGR ELLLTILPAS LMAAMLGGYF TWMQLSELQS QLLLRGEMIA QDLAPLSASA LGRKDKVLLS RIATQTLEQP DVRAVSFLDV DRSPLAHAGP TMISPTPIGN SSQLLNSTGT DATRYLLPVF GNQRHLTSPI IPAEADTLMG WVDVEISHNG TLLRGYRSLF ASLLLIFTGL AITAVVAVRL SRTINGPMSQ IKQAVSQLKD GNLETRLPPL GSRELDELAS GINRMAATLQ NAQEELQMSI DQATEDVRQN LETIEIQNIE LDLARKEALE ASRIKSEFLA NMSHEIRTPL NGILGFTHLL QKSELTPRQF DYLATIEKSA DNLLSIINEI LDFSKIEAGK LVLDNIPFNL RDLLQDTLTI LAPAAHAKHL ELVSLVYRDT PLALSGDPLR LRQILTNLVS NAIKFTREGT IVARAMLEDE TEEHAQLRIS VQDTGIGLSS QDVRALFQAF SQADNSLSRQ PGGTGLGLVI SKRLIEQMGG EIGVDSTPGE GSEFWISLKL PKAREDKEES LNLPLEGLRA AVLEHHDLAR QALEHQLEDC GLHTVVFTNL ENLLNGVTAA HETPAAIDLA VLGVTTLEIS PERLRQHIWD LENLNCKVMV LCPTTEYALF QLAVHDVYTQ LQAKPACTRK LQKALSELIA PRAIRADIAP PLSSRAPRVL CVDDNPANLL LVQTLLEDMG AEVMAVEGGY AAVNAVQQEA FDLVLMDVQM PGMDGRQATE AIRAWEAERG QSSLPIVALT AHAMANEKRS LLQSGMDDYL TKPISERQLA QVVLKWSGLA LRNPAPERQN ESLEAHVGPL VLDPEEGLRL AAGKADLAAD MLAMLLASLD ADREAIRVAR ASQDVQALIE RIHRLHGATR YCGVPQLRTA CQRAETLLKQ DAPHTGDALD DLDKAIVRLE TEARVTA
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