| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1682 |
|---|
| Symbol | dctA-1 |
|---|
| ID | 1183319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1852071 |
|---|
| End bp | 1853453 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637393054 |
|---|
| Product | C4-dicarboxylate transport protein |
|---|
| Protein accession | NP_791507 |
|---|
| Protein GI | 28868888 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1301] Na+/H+-dicarboxylate symporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.662063 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACGA CGCCCTTGAG GAAAACTGCA ATGACGACTC GTCAGCCCAT CTACAAATCC
CTCTATTTTC AGGTAATCGT AGCGATTGTC ATCGGTATCC TGATCGGTCA CTTCTACCCG
GAAACCGGCA AGGCTTTAAA GCCACTGGGT GACGGGTTCA TCAAACTGAT CAAGATGGTT
ATCGCTCCGA TCATCTTCTG TACGGTTGTC AGCGGTATCG CCGGCATGCA GAACATGAAG
TCGGTCGGCA AGACCGGTGG TTATGCGCTG CTGTACTTCG AGATCGTTTC GACCATCGCC
CTGCTGATCG GTCTGATCGT GGTCAACGTG GTTCAGCCGG GTGCCGGCAT GAACATCGAC
GTCAGCACGC TTGATGCCTC CAAGATCGCG GCTTATGTGA CTGCCGGTAA AGACCAGAGC
ATCGTCGGCT TTATCCTCAA CGTGATTCCG AACACCATCG TCGGCGCGTT CGCCAACGGC
GATATCCTGC AAGTCCTGAT GTTCTCGGTG ATCTTCGGTT TCGCCCTGCA TCGTCTGGGT
TCGTATGGCA AGCCGGTTCT GGACTTCATC GATCGCTTCG CCCACGTGAT GTTCAACATC
ATCAACATGA TCATGAAGCT GGCGCCTATC GGTGCGTTCG GTGCCATGGC CTTCACCATC
GGTGCCTACG GCGTAAGTTC GCTGGTGCAG TTGGGTCAGT TGATGATCTG CTTCTACATT
ACCTGCGTGC TGTTCGTGGT GCTGGTGCTG GGCTCCATCT GCCGCGCTCA CGGTTTCAGC
ATCTTCAAGC TGGTTCGTTA CATCCGTGAA GAACTGTTGA TCGTACTGGG TACTTCCTCT
TCGGAATCGG CCCTGCCACG CATGCTGATC AAGATGGAGC GTCTGGGTGC GCAGAAGTCT
GTCGTAGGTC TGGTTATCCC GACCGGTTAC TCGTTCAACC TGGACGGTAC CTCGATCTAC
CTGACCATGG CTGCCGTGTT CATCGCTCAG GCGACCAACA CGCACATGGA CATCACTCAC
CAGATCACCC TGTTGCTGGT GTTGCTGCTG TCGTCCAAAG GTGCTGCCGG CGTAACCGGT
AGCGGCTTCA TCGTACTGGC TGCCACCCTG TCGGCTGTTG GCCACCTGCC GGTCGCCGGT
CTGGCGCTGA TTCTGGGTAT CGACCGCTTC ATGTCCGAAG CCCGCGCCCT GACCAACCTG
GTCGGTAACG CTGTTGCGAC TGTCGTGGTT GCCAAGTGGG TTGGCGAGCT GGACACCGAC
AAGCTGCAGT CCGAGCTGGC TTCCGGTGGC AGTGCCATCC TGGAAACCCG TCCTGAAGAC
GACCTCGGCG TTGCCGAAGG CCCGACTCCG GCCAACGCGG TGAACACCAC CAAGACCGTC
TGA
|
|---|
| Protein sequence | MPTTPLRKTA MTTRQPIYKS LYFQVIVAIV IGILIGHFYP ETGKALKPLG DGFIKLIKMV
IAPIIFCTVV SGIAGMQNMK SVGKTGGYAL LYFEIVSTIA LLIGLIVVNV VQPGAGMNID
VSTLDASKIA AYVTAGKDQS IVGFILNVIP NTIVGAFANG DILQVLMFSV IFGFALHRLG
SYGKPVLDFI DRFAHVMFNI INMIMKLAPI GAFGAMAFTI GAYGVSSLVQ LGQLMICFYI
TCVLFVVLVL GSICRAHGFS IFKLVRYIRE ELLIVLGTSS SESALPRMLI KMERLGAQKS
VVGLVIPTGY SFNLDGTSIY LTMAAVFIAQ ATNTHMDITH QITLLLVLLL SSKGAAGVTG
SGFIVLAATL SAVGHLPVAG LALILGIDRF MSEARALTNL VGNAVATVVV AKWVGELDTD
KLQSELASGG SAILETRPED DLGVAEGPTP ANAVNTTKTV
|
|---|
| |