| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1680 |
|---|
| Symbol | phoQ |
|---|
| ID | 1183317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1850398 |
|---|
| End bp | 1851744 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637393052 |
|---|
| Product | sensor protein PhoQ |
|---|
| Protein accession | NP_791505 |
|---|
| Protein GI | 28868886 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATTCGTT CGCTTCGCCT GCGTCTGATG TTGGGCGCCG CCACGTTGGC GGTGATCTTC
ATGTTACTGA TGCTGCCTGC GCTGCAGGGC GCATTCAGCC TGGCGCTGCG CGGGGCGATC
GAACAAAGGC TGGCTTCCGA TGTGACCACC ATGATTTCGG CGGCGCGCGT CGAAGACGAC
CATCTGTTGA TGCCGTCGGT GCTGCCGGGC GAACAGTTCA ACCTGCCCGG CAGTCGCCTG
CTGGGCTACA TCTATAACCG TCAGGGGCAG ATGGTCTGGC GTTCGCTGTC TACCGAGTCC
GAGAACATCG ACTACCACCC GCACTATGAC GGGCAGGGCA GCGAATTCAC CAAGATCAAG
GAAATCAACG GCGACGAGTT CTTCGTCTAT GACGTCGAGA TTCGCCTGCT CGGCGGTCGC
AACGCCGCCT ACAGTATCGT CGCCGTGCAG CCATTGCGCG GCTACCAGGA AACCATCGAC
GGTTTGCGCC GCAAACTCTA CCTAGGCTTT GGCGCTGCGT TGGCGGTGCT GCTCGGGCTG
CTGTGGATGG GCCTGACCTG GGGGTTGCGT GCACTGCGCG GCCTGAGTCA GGAGCTCGAT
CAGGTGGAAT CGGGCGTGCG CGACAGCTTG AGTGAAGAGC ATCCCAGCGA ACTCCTGCGC
CTGACCGACT CGCTCAACCG CCTGCTGCGC AGCGAGCGTG AGCAACGGAT TCGTTACCGC
GATTCACTCG ACGACCTGGC TCACAGCCTG AAAACACCAC TGGCGGTGTT GCAGGGCGTC
AGTGAAAACA TCGCCAAACG CCCCGAGGAC GTTGAGCAGG CCTGGGTGCT GCAATCGCAG
ATCGAGCGCA TGAGCCAGCA GATCGGCTAT CAACTGCAAC GCGCCAGCCT GCGCAAGAGC
GGTCTGGTGC GCCACCACGT GATGCTGCGG CCAGTGGTCG AAAGCCTGTG CAACACGCTG
GACAAGGTCT ACCGCGACAA GCAGGTCAAG GCCACGCTCG ACCTGCCGGA GCTTTGTCAG
GTGCACATGG AAGAGGGCGC GCTGCTGGAA ATGCTCGGCA ACCTGCTGGA AAACGCCTAT
CGGCTGTGCC TGAGCGAAGT ACGCGTCAGC TTCACCCGCT CAGCGGACGG CGATGAGCTG
TGCATCGAAG ACGACGGCCC CGGCGTCCCG CACAGCCAGC GCGCGCGTAT CCTTGAGCGT
GGCGAACGAC TGGACCGCCA GAACCCCGGG CAGGGCATTG GCCTGGCGGT GGTCAAGGAC
ATCATCGAAA GCTATGGCGC ACAACTGACG CTGGGGGACT CACCGCTGGG AGGCGCGGCG
TTCAGGATTC ATTTTCTGGC GCAGTGA
|
|---|
| Protein sequence | MIRSLRLRLM LGAATLAVIF MLLMLPALQG AFSLALRGAI EQRLASDVTT MISAARVEDD
HLLMPSVLPG EQFNLPGSRL LGYIYNRQGQ MVWRSLSTES ENIDYHPHYD GQGSEFTKIK
EINGDEFFVY DVEIRLLGGR NAAYSIVAVQ PLRGYQETID GLRRKLYLGF GAALAVLLGL
LWMGLTWGLR ALRGLSQELD QVESGVRDSL SEEHPSELLR LTDSLNRLLR SEREQRIRYR
DSLDDLAHSL KTPLAVLQGV SENIAKRPED VEQAWVLQSQ IERMSQQIGY QLQRASLRKS
GLVRHHVMLR PVVESLCNTL DKVYRDKQVK ATLDLPELCQ VHMEEGALLE MLGNLLENAY
RLCLSEVRVS FTRSADGDEL CIEDDGPGVP HSQRARILER GERLDRQNPG QGIGLAVVKD
IIESYGAQLT LGDSPLGGAA FRIHFLAQ
|
|---|
| |