| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1649 |
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| Symbol | |
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| ID | 1183286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1808975 |
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| End bp | 1811980 |
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| Gene Length | 3006 bp |
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| Protein Length | 1001 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637393021 |
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| Product | autotransporter, putative |
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| Protein accession | NP_791474 |
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| Protein GI | 28868855 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat
[TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAAGT CGAAGTGTGT GAGTGCTGCC CGTTATTCTT CAAAAACCGT AGCAACTGGC
GCACTGTGCG CGCTGTCTTT TACTTTCGGC TGTTCGGCCT ACGCTGATTA TGTCGAGCAG
GGAAAGTTGG GTGATGCGGC CAGTTGGCGT TCAGCAGAGT TCCAAAGTGA CTGGGGCCTG
GGCCGCATTC AGGCTGATCA GGCCTACGCT GCTGGCATGA CGGGCGCAGG GGTCAAGATC
GGTGCGCTGG ACTCGGGTTT CGATCCGTCT CACCCAGAAG CCAGCCCGTC CCGCTTTCAG
GCAGTAACCG CCACGGGCAC TTACGTCAAC GGCACACCGT TCAGCGTCAC CGGCGCGATC
AACCCCAACA ACGACACCCA CGGAACGCAC GTCACCGGCA CCATGGGCGC GGCGCGCGAT
GGCGTGGAGA TGCATGGCGT GGCGTACAAC GCGCAAATCT ACGTTGGTAA CACCAATCAG
AACGACAGCT TCCTGTTCGG CCCCAACCCG GACCCGCAGT ATTTCAAGGC GGTGTACGGC
GCACTGGCTG ATGCTGGCGT GCGCGCCATC AACAACAGCT GGGGCAGCCA GCCGGCCGAC
GTGACCTACG CCACCGAGTC TGGCGTGCGC GCCGCCTATG CCCAGCATTA CAACCGTGGC
ACCTGGCTGG ATGAAGCGGC CAACGTCTCG CGCAAGGGCG TGATCAACGT GTTCAGCGCT
GGCAACTCCG GCTACGCCAA CGCCAGCGTG CGCGCCTCTT TGCCGTATTT CGAGCCAGAC
CTCGAAGGCC ACTGGCTTGC CGTGTCGGGC CTCGACGCCT CCACCGGTCA ACGCTACAAC
CAGTGCGGCC TGTCCAAATA CTGGTGCATC ACCATGCCCG GCCGGCTGAT CAACAGCACC
GTGCCCGGCG GCGGTTACGG CATCAAGTCC GGCACCTCAA TGTCTGCACC GCATGCCACC
GGCGCACTGG CGCTGGTGAT GGAACGCTTC CCGTACCTGA ACAACGAGCA GGCGCTGCAA
GTGCTGCTGA CCACCGCCAC CCAGCTCGAT GGCTCGGTCA CTCAGGCGCC GACCACCAGC
GTCGGTTGGG GCGTGGCCAA TCTGGAGCGG GCGATGCGCG GTCCCGGTCA ATTGCTCGGC
ACCTTCGACG CCAACCTCGG CACAGGCTTG ACCGATACAT GGAGCAACAA TATCTCCGAT
CAGGCGTTGA TTCAGCGTCA GGCCGAAGAC ACTGCCGAAC ACGCCACATG GCAGCAAACA
CTGATCAGCA AAGGCTGGCA AAACGGCGTC GCCAGCACTG CCAGCCAGCA GGACCAGGCC
GACTACGCAA CAGGCAGCGC CCGTGCTGCC GCCGCTGCAC AGCGCCAGTA CCAAGGCAGC
CTGATCAAAT CCGGTGCGGG CCGGCTGATT CTGCAAGGTG CCAACACTTA TCGTGGCGAA
ACGCTGGTCA ACGGCGGCGT GCTGTCGGTC AACGGCTCGC TGGTGTCCGC CGTGCAGGTC
AACGCGGGCG GCACGCTGGG CGGCAATGGC CAGATCGGCG GGCTGACTGC GCGTAACGGC
GGCGTGGTCG CGCCGGGCAA TTCCATCGGC ACCTTGCAGG TCAACGGCAA CGTCCTCCTT
GAGCCAGGTT CGACCTACGC CGTAGAGCTT TCGCCCGCCG CCAGCGACCG CATCGTCGCC
ACCGGCAGTG CCACCGTGTC AGGTGCCAAC ATGACCCTGG CGCTTCTGGA CAACACGCCG
GTTGCCTTGA ATTCTGTACC CACCCAAAGC GTTGCAGGCC CTCAGTACAA CGTGCTGCAG
GCCGCCAACG GCATCAACGG CCAGTTCGGC TCAGTCACTT CAAACTACGC TTTTCTGGGC
GGCCGACTCG ACTACGCAGC CACCGGCGTT GCGTTGAACA TCGAGCAAAC AGCCGCCTTC
AACAGCGTTG CACGAACCCC TAACCAAGCT GCCGTGGCGA CAGCCGCCGA ACAACTCGGT
GCAGGCAATG CGGTGTACGA AAACCTGTTA CTCACGCAAA ACCCGGCCTC TGCCCGCGAC
AGCTTTCAGC AATTGTCCGG CGAGATTTAC CCGGCCATTG GCAGCGTGCT GATCAACGAC
AGCCGGCAGG TTCGTGATGC GGTGGGCGAG CGTCTCGGGG CCAGCGTGTT GGGCGGCGAG
GGCAACACTG CCGCGCAAGA CAATGTCTGG ATTAAAGCCT TGGGTGCCTG GGGCAAGACT
GATTCGCGCG ACGACACCAC CGGTTACACC ACCTCGATCG GCGGCCTGCT GGCGGGCGTC
GATGGCAACG TTGCCGACGA CACGCGTCTG GGCGCCGTCG CGGGTTACAG CGACAGCTCG
TTGAACATGG GCTCGGGCAC ACATTCCCGG GCCTCGGTGG ACAGCTACCA TCTGGGCGCT
TACGTCGGTC ATGAAATCGG CGCACTGAGC CTGACCCTCG GCGGCGCACA CAGCTGGCAC
CGCATCGATG CACAACGTGA CGTGCAGGTC GGCGGTGCAG CAGGCAAGGA AAAAACCAAA
CACGATGCCC AGAGCACGCA AGTGTTCACC GAAGCGGCGT ATCGCATCCG CTTGCAACCC
GCGACCCTCG AGCCGTTCGC CAATCTGGCC TACGTCCACC TCAACACCGA CAGCTTCACC
GAGAAGGGCG ATGCGGCGGC GCTGTCTGCC GGTAGCGATA ACCGTGATGC CGTGCTCAGT
ACCCTCGGCC TGCGCGCATT GAAAACAATC GCAATCACCG AACGGCAAAA GGTCGACCTG
TCCGGCAGCC TCGGCTGGCA GCACAACCTG AGCAGCACCG ATTCCGAACA GCACCTGGCA
TTCGCCTCGG GTGGTGGCAG TTTCGGCATC GAAAGCTCGC CGCTGGTCCG CGATGCGGCA
CTGGTCGGCG CCCACGCCAG CGTTGCGCTG AGCAAGGACG CGAGGATCAG CCTCGATTAC
AGCGGCCAAC TGGCCAGCCG TGAAAAAAGT CATGGTGTTG GCCTGAGCCT TAACTGGCAG
TTCTGA
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| Protein sequence | MQKSKCVSAA RYSSKTVATG ALCALSFTFG CSAYADYVEQ GKLGDAASWR SAEFQSDWGL
GRIQADQAYA AGMTGAGVKI GALDSGFDPS HPEASPSRFQ AVTATGTYVN GTPFSVTGAI
NPNNDTHGTH VTGTMGAARD GVEMHGVAYN AQIYVGNTNQ NDSFLFGPNP DPQYFKAVYG
ALADAGVRAI NNSWGSQPAD VTYATESGVR AAYAQHYNRG TWLDEAANVS RKGVINVFSA
GNSGYANASV RASLPYFEPD LEGHWLAVSG LDASTGQRYN QCGLSKYWCI TMPGRLINST
VPGGGYGIKS GTSMSAPHAT GALALVMERF PYLNNEQALQ VLLTTATQLD GSVTQAPTTS
VGWGVANLER AMRGPGQLLG TFDANLGTGL TDTWSNNISD QALIQRQAED TAEHATWQQT
LISKGWQNGV ASTASQQDQA DYATGSARAA AAAQRQYQGS LIKSGAGRLI LQGANTYRGE
TLVNGGVLSV NGSLVSAVQV NAGGTLGGNG QIGGLTARNG GVVAPGNSIG TLQVNGNVLL
EPGSTYAVEL SPAASDRIVA TGSATVSGAN MTLALLDNTP VALNSVPTQS VAGPQYNVLQ
AANGINGQFG SVTSNYAFLG GRLDYAATGV ALNIEQTAAF NSVARTPNQA AVATAAEQLG
AGNAVYENLL LTQNPASARD SFQQLSGEIY PAIGSVLIND SRQVRDAVGE RLGASVLGGE
GNTAAQDNVW IKALGAWGKT DSRDDTTGYT TSIGGLLAGV DGNVADDTRL GAVAGYSDSS
LNMGSGTHSR ASVDSYHLGA YVGHEIGALS LTLGGAHSWH RIDAQRDVQV GGAAGKEKTK
HDAQSTQVFT EAAYRIRLQP ATLEPFANLA YVHLNTDSFT EKGDAAALSA GSDNRDAVLS
TLGLRALKTI AITERQKVDL SGSLGWQHNL SSTDSEQHLA FASGGGSFGI ESSPLVRDAA
LVGAHASVAL SKDARISLDY SGQLASREKS HGVGLSLNWQ F
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