| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1646 |
|---|
| Symbol | |
|---|
| ID | 1183283 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1803599 |
|---|
| End bp | 1805752 |
|---|
| Gene Length | 2154 bp |
|---|
| Protein Length | 717 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637393018 |
|---|
| Product | LysM domain protein |
|---|
| Protein accession | NP_791471 |
|---|
| Protein GI | 28868852 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.435509 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCGCG AGTTGTTTTG CAAGGGCGCC ATTGCGGCAG CGTTGCTGAG CTGTTCAACG
ATGGCGTCCG CGCTGGGGCT GGGCGAAATG AAGCTGCACT CGGCGCTCAA CCAGCCGCTG
AATGCTGAAA TCGAGTTGCT GGAGACCGGC GGTCTCAGCA ATGAGGACGT TATTGCCAGG
CTCGCATCGC CCGAAGCCTT CGCCAAGGCA GGCATCGAAC GGGTGTTCTT CCTCAATGAC
CTTCGTTTCA CCCCCGTGCT GCGCGGTAAC AGTGGCGTGA TCAGGGTGGT TTCCAACAAG
CCGGTCACCG AACCTTACCT GAGTTTCCTC GTCCAGTTGG CGCGCCCGAA CGGCGATCTG
CTGCATGAAT ACACCGTGCT GCTCGACCCT GCCACGTCAC CGCAAGGGCT CGCTGCCACG
CGCAGCCGCA ATCAGCAGCG TTCGCTGAAT GCTGCGCAGG AATCGCGCAT GCCGGTCGCG
CCACCGGCAG CGCTGCAAGG CAAACATTAC ACGGTCGCCA GTGGCGACAC GCTGAATGGC
ATCGCCAGCC GCCTGCAAGG GCCGGGCGGG AAAGTATCGG CCAGCCAGAT GGCCGAAGCC
ATTCGCGCGC TCAACCCGCA GGTATTTGCT GCAGGGGCAG GTTCCGCGCT TAAAGTCGGT
CAGGACCTGT TACTGCCTGA TTCCGCCGTA ATGCCCGCCG CTGCCACAGC CCCCGCTGCA
AGCGCAGTTG TAGCGCCGCC TGCCGAGTTG CAGCGCACCG CCGAGCAGCT GTCGGCGGCT
GCTATCGAAA ACCAGCAGTT GGCGCAGTCT CTGGAAGCGC TCAAGACCCA GACCCAGGAA
CTGCAAGAGC AGATGATTGG CAAGGACAAG CAGATCACTG CGTTGCGCAG CGACCTTGCC
CTGGCGCAGT CCGCGGCCCG ACCTGCCGCA CCCGCCACGC CGCCCGCGGC CCCGGCTCAG
CCGGCGGTGA CCGTTGCATC GAGCAGCGAG CCTCTCGTGA GCTTGCCAAT ACTGCTCGCG
ATACTGGCGC TGGTGCTTCT GTTGCTGGTG TATGCCTACT CGAAACGCCG TCAGCGTCGT
CATGCCACGG CCCCTGTCGT TGCGCAGGAT GACCCGCTGA TCAAGCCTGC CCAGGCCGCC
ATGCTCCCTG TGTTCGAGGT GCCCGCCGTT GCGCCGCAGC CTGCCGCCCA GGCATCGCCA
TCGACGCTGG TCAAGGCTGC GACGCCGCAA CGTCCGGCTG GCGCTGTGCC CGATGCGCTG
GACGGTGTCA GCATTTACAT TGCCTACGGG CGATTCAGCG AGGCAATGGG CATTCTGCGC
AGCGCCCTGG AAACCCAGCC GGAGCGCGGC GACATTCGCA TCAGGTTGCT GGAGTTACTG
GCCGAGCAGG GCGATGGCAG CGGCTTTGTT CGCGAAGAGC GCTCAGCGCT TGAGCACGGC
GTCGATCCGC AGACCATTCA GGACATTCGC GATCGCTTTC CACAACTCAA AGCGGCGGAG
GCGGCCCCTG CTGCGTTCCT CCCCGCTGCT GCGGTCGTAG CAGCGTCCAC GCTGTCTTTC
GACAAAGCCG AACCAGAGCC AGCTGCCTAC CTGCAACCGG ACCTGGAGCC TGAGCCCCCG
GCGCAACTGG ACGAAACAGC CGCCGCGTCC CTCAACCCGC AGCAAACCGA TGAATTCCAG
CTGAACCTGG ATGACCTGTC GATGGACGCC GACTGGGATC TGGTCGATCC GTTTGACACG
CCGCCGCCGC GCAGCAAGCC AGAGACCGTG ACAGCGCCTG CGCCCGCTGA AGTCGACCCC
GGCTTTTCTT CGGACCTGAC TCGATTGCCG GAAGTCTTCG AGCTGTCGGA TGAGCAATTT
CTCAGTGATT TCTCCGAGCC GGATGGCATT GAGCCGATCG AGCCAATCGA AGTGGTTGCA
CCCGCCGCTG CCGACGATCT GAGCGACGAG TTTCTCGACA GCTTCATGAA CGATGACGGG
GATTTCGACC TGCTGGATCT TGAAGAGCCG CCGCTCAGCC AGATCAATCA GGCTCAGGTA
CTGATCGAGG AGGGCGACTT GGAGTCGGCT CGTGAAATCC TGCAACAGGT GATTGACGAG
TCCGACGAAG AGCATCGGCG CATGGCGCGC GAGCTGTTGG CGGGCATCAG CTGA
|
|---|
| Protein sequence | MARELFCKGA IAAALLSCST MASALGLGEM KLHSALNQPL NAEIELLETG GLSNEDVIAR
LASPEAFAKA GIERVFFLND LRFTPVLRGN SGVIRVVSNK PVTEPYLSFL VQLARPNGDL
LHEYTVLLDP ATSPQGLAAT RSRNQQRSLN AAQESRMPVA PPAALQGKHY TVASGDTLNG
IASRLQGPGG KVSASQMAEA IRALNPQVFA AGAGSALKVG QDLLLPDSAV MPAAATAPAA
SAVVAPPAEL QRTAEQLSAA AIENQQLAQS LEALKTQTQE LQEQMIGKDK QITALRSDLA
LAQSAARPAA PATPPAAPAQ PAVTVASSSE PLVSLPILLA ILALVLLLLV YAYSKRRQRR
HATAPVVAQD DPLIKPAQAA MLPVFEVPAV APQPAAQASP STLVKAATPQ RPAGAVPDAL
DGVSIYIAYG RFSEAMGILR SALETQPERG DIRIRLLELL AEQGDGSGFV REERSALEHG
VDPQTIQDIR DRFPQLKAAE AAPAAFLPAA AVVAASTLSF DKAEPEPAAY LQPDLEPEPP
AQLDETAAAS LNPQQTDEFQ LNLDDLSMDA DWDLVDPFDT PPPRSKPETV TAPAPAEVDP
GFSSDLTRLP EVFELSDEQF LSDFSEPDGI EPIEPIEVVA PAAADDLSDE FLDSFMNDDG
DFDLLDLEEP PLSQINQAQV LIEEGDLESA REILQQVIDE SDEEHRRMAR ELLAGIS
|
|---|
| |