Gene PSPTO_1598 details

Gene Information

• Locus tag: PSPTO_1598
• Symbol: def-2
• ID: 1183235
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 1755282
• End bp: 1755821
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637392970
• Product: polypeptide deformylase
• Protein accession: NP_791423
• Protein GI: 28868804
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.331513
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCCGTA ACATCCTGAA GATGGGCGAT GAGCGCTTGT TGCGCATCGC CCCGCCGGTT 
CCCGCAGAAA TGTTCGGCAG CAGTGAGCTT GAGACGCTGA TTGCCGACAT GTTCGAGACC 
ATGCACAGCG TGGGCGGAGT GGGCCTGGCG GCACCGCAGA TCGGCATTGA TCTGCAGTTG 
GTGATTTTCG GTTTTGAACG CAGCGAGCGT TATCCCCAGG CCGAAGCCGT CCCCCAGACC 
ATCCTCCTCA ACCCGTTGAT TACCCCATTG CATCCTGGCG TTGAAGAGGG CTGGGAAGGC 
TGTTTGTCGG TGCCAGGGTT ACGTGGCATG GTGGACCGTT ATCAGAGCAT CCGTTATGAA 
GGTTTTGACC CGGACGGTCA GCCGATCGAA CGCATCGCTC ACGGTTTTCA CGCGCGGGTT 
GTCCAGCATG AATGCGATCA TCTGATCGGT CGGCTGTACC CGTCGCGCAT TACTGATTTC 
AGCAAATTCG GCTTCATGGA CGTGATGTTT CCGGACATGG ACCCCAATGC GGATGAATGA 

 

Protein sequence

MIRNILKMGD ERLLRIAPPV PAEMFGSSEL ETLIADMFET MHSVGGVGLA APQIGIDLQL 
VIFGFERSER YPQAEAVPQT ILLNPLITPL HPGVEEGWEG CLSVPGLRGM VDRYQSIRYE 
GFDPDGQPIE RIAHGFHARV VQHECDHLIG RLYPSRITDF SKFGFMDVMF PDMDPNADE