| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1565 |
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| Symbol | rpoS |
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| ID | 1183202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1727080 |
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| End bp | 1728087 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637392937 |
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| Product | RNA polymerase sigma-38 factor |
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| Protein accession | NP_791390 |
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| Protein GI | 28868771 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.651604 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCTTG GCAACGAAGC GCCGGAGTTT GACATCGATG ATGAAGTGCT CCTTATGGAA
GCCGGCATTG TCCTGAAGGA AGCGTCAAAC GAGAAGCAGC CTGCTGCTGC CTCGGGACGC
ACCAAGGCCA AGCAATCAAC GTCGCTCAAA CAACACAAAT ACATTGATTA CACGCGGGCG
CTCGACGCTA CCCAGCTGTA CCTCAATGAA ATCGGGTTTT CCCCTCTGCT GTCTCCGGAA
GAAGAAGTGC ATTTTGCGCG GTTGTCGCAA AGTGGAGATC CGGCCGGGCG CAAACGCATG
ATTGAGAGCA ATCTGCGGCT GGTGGTTAAA ATCGCCAGGC GTTACGTCAA TCGTGGTCTT
TCATTGCTGG ATCTGATCGA AGAGGGCAAC CTTGGCTTGA TCCGCGCCGT TGAAAAGTTC
GATCCCGAAC GCGGCTTCCG CTTCTCTACT TACGCCACCT GGTGGATTCG TCAGACCATC
GAGCGTGCGA TCATGAATCA GACCCGGACC ATCCGGTTGC CGATTCACGT GGTCAAAGAG
CTGAACGTCT ACTTGCGTGC AGCCAGAGAG CTGACCCAGA AGCTCGATCA CGAGCCATCC
CCTGAAGAGA TCGCCAACCT GCTGGAAAAA CCGGTAGGGG AGGTCAAGCG CATGCTGGGC
CTTAACGAGC GCGTATCGTC GGTGGACGTA TCTCTGGGAC CTGACTCGGA CAAGACCCTG
CTCGACACCC TGACTGATGA CCGTCCGACC GACCCCTGCG AGTTGCTGCA GGATGATGAT
CTGTCGCAGA GCATTGACCA GTGGCTATCC GAGCTCACCG AAAAGCAGCG TGAGGTCGTC
ATCCGCCGCT TCGGTTTGCG CGGGCACGAA AGCAGCACGC TTGAAGATGT AGGGCTTGAG
ATCGGTCTGA CGCGCGAGCG TGTAAGGCAG ATACAGGTTG AAGGGCTGAA ACGCCTGCGT
GAGATCCTTG AAAAGAACGG CCTGTCCAGC GAGTCACTCT TCCAGTAA
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| Protein sequence | MALGNEAPEF DIDDEVLLME AGIVLKEASN EKQPAAASGR TKAKQSTSLK QHKYIDYTRA
LDATQLYLNE IGFSPLLSPE EEVHFARLSQ SGDPAGRKRM IESNLRLVVK IARRYVNRGL
SLLDLIEEGN LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE
LNVYLRAARE LTQKLDHEPS PEEIANLLEK PVGEVKRMLG LNERVSSVDV SLGPDSDKTL
LDTLTDDRPT DPCELLQDDD LSQSIDQWLS ELTEKQREVV IRRFGLRGHE SSTLEDVGLE
IGLTRERVRQ IQVEGLKRLR EILEKNGLSS ESLFQ
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