| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1564 |
|---|
| Symbol | |
|---|
| ID | 1183201 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1726109 |
|---|
| End bp | 1726975 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637392936 |
|---|
| Product | lipoprotein NlpD, putative |
|---|
| Protein accession | NP_791389 |
|---|
| Protein GI | 28868770 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCTCA CAGTCATTCA GCAGCTCAGG TCTTCAAGAA ATTTTCAGCG TCTGGTGATT
GGCATTGCTC TCAGTGTCCT TTTGGTCGGC TGCTCCAGCT CGCCCTCGGG CGGCGTTCGC
GTGGTCGATC GCAACGGCAA CACCGTAGCG CAACGTCCGA CAGTGACCAC CGGTCAGTAT
GTCGTCAGGC GCGGTGACAC GCTCTTTTCG ATTGCATTCC GTTACGGCTG GGACTGGAAA
GCGCTGGCGG CGCGTAATCA GATCCCGGAG CCGTTTACCA TCAAACCAGG TCAGACAATT
CGCTTTGACG GACGCTCCTC TTCAACATCC GAGGTCGCTT CAGGGCCTTC CGGTACACGT
CCGGTGACGA CCACATCGAC CAGCACGAGC AGCTCGGGCT CGGTCAAAAC CACGGTTATT
TCCAAGCCGA TCACGGTTGT ACCTGTGGTG ATACCTCCCT CCGCGACCAC CGGCACAGGC
CCGGCGGGCA AGTCTCCTAC GGGTTGGACC TGGCCTTCCA GTGGCATTTT GATAGGTAAA
TTTTCCTCAA ACGGCAGTTT GAATAAAGGA ATTGATATCG CTGGTGATTT GGGACAGCCT
GTTTTGGCAG CGTCTGATGG TTCAGTTGTT TACGCCGGAA GTGGATTACG GGGCTACGGC
GAATTGATCA TCATCAAACA CAGCGACACC TACGTCAGTG CCTACGGTCA TAATCGCAGG
TTGTTAGTAC GGGAGGGGCA ACAGGTCAAG GCAGGGCAGA CGATTGCCGA GATGGGGTCA
ACAGGAACTG ACCGGGTGAA ACTGCATTTT GAGATTCGCC GCCAAGGGAA ACCTGTAGAT
CCATTGGGAT TCTTGCCACG CCGTTGA
|
|---|
| Protein sequence | MSLTVIQQLR SSRNFQRLVI GIALSVLLVG CSSSPSGGVR VVDRNGNTVA QRPTVTTGQY
VVRRGDTLFS IAFRYGWDWK ALAARNQIPE PFTIKPGQTI RFDGRSSSTS EVASGPSGTR
PVTTTSTSTS SSGSVKTTVI SKPITVVPVV IPPSATTGTG PAGKSPTGWT WPSSGILIGK
FSSNGSLNKG IDIAGDLGQP VLAASDGSVV YAGSGLRGYG ELIIIKHSDT YVSAYGHNRR
LLVREGQQVK AGQTIAEMGS TGTDRVKLHF EIRRQGKPVD PLGFLPRR
|
|---|
| |