Gene PSPTO_1560 details

Gene Information

• Locus tag: PSPTO_1560
• Symbol: ispF
• ID: 1183197
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 1722961
• End bp: 1723434
• Gene Length: 474 bp
• Protein Length: 157 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637392932
• Product: 2C-methyl-D-erythritol 2,4-cyclodiphosphate
• Protein accession: NP_791385
• Protein GI: 28868766
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.507712
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTATTG GCCATGGCTA TGATGTGCAC CGTTTCGCTG AAGGCGATTT CATTACCTTG 
GGCGGCGTGC GGATTGCACA CGGGTTCGGC CTGCTGGCCC ACTCCGATGG CGATGTCCTG 
CTGCATGCGC TGAGCGATGC GCTATTGGGC GCGGCAGCGC TGGGCGACAT CGGCAAGCAC 
TTTCCCGACA CAGACCCGCA ATTCAAAGGC GCTGACAGCC GCGTATTGCT GCGTCATGTG 
CTCAAGCAGA TCCACGGCAA AGGCTGGAAG GTCGGCAATG TCGACGCCAC CATTGTCGCC 
CAGGCACCGA AAATGGCACC GCATATTGAT GCCATGCGTG CGTTGATCGC CGAGGATCTG 
CTCGTGGAGC TGGATCAGGT GAACGTGAAA GCGACGACCA CGGAAAAACT CGGCTTTACC 
GGCCGTGAAG AAGGCATTGC GGTGCATGCT GTCGCGTTGT TGCTGCGCGC ATGA 

 

Protein sequence

MRIGHGYDVH RFAEGDFITL GGVRIAHGFG LLAHSDGDVL LHALSDALLG AAALGDIGKH 
FPDTDPQFKG ADSRVLLRHV LKQIHGKGWK VGNVDATIVA QAPKMAPHID AMRALIAEDL 
LVELDQVNVK ATTTEKLGFT GREEGIAVHA VALLLRA