Gene PSPTO_1548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1548 
SymbolrnhB 
ID1183185 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp1707663 
End bp1708316 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content59% 
IMG OID637392920 
Productribonuclease HII 
Protein accessionNP_791373 
Protein GI28868754 
COG category[L] Replication, recombination and repair 
COG ID[COG0164] Ribonuclease HII 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAACAG GTCTGGATTT CACCCTTGTC GAGGACCTGG TCGCAGGCGT TGACGAAGTC 
GGCCGCGGCC CATTGTGTGG CGCAGTGGTG ACCGCTGCAG TCATTCTTGA CCCCGCCAAG 
CCCATTCTCG GGCTCAATGA CTCGAAGAAA CTGACCGAAG CCAAACGCGA AAAGTTGTTT 
GTCGAAATTC AGGAAAAGGC CTTGTGCTGG TTCATCGCCC GGGCTGAAGT TGAAGAAATC 
GACCAGTTGA ACATCTTGCA CGCCACAATG CTGGCCATGA AGCGCGCCGT AGAAGGGTTG 
AGCATCACCC CGAAACTGGC CCTGATTGAC GGCAATCGCT GCCCGCAACT GTCGGTGCCC 
TCTGCACCGG TGGTCAAGGG TGACTCCAAA GTGCCGGCGA TTGCCGCCGC ATCGATTCTC 
GCCAAAGTGA GCCGTGATCG TGAAATGGCT GCGCTCGAGC TGATTTATCC GGGTTATGGC 
ATCGCTGGGC ACAAGGGGTA TCCTACGCCG GTGCACCTTG AGGCACTGGC CCGGCTCGGG 
CCTACGCCTA TTCATCGGCG TTCTTTCGGG CCAGTGCGTA CGGCCCATGA AGCGCGTGCG 
GCCATCATGC TCGGCGGTTC GATCCCGTTA CCGGTCGGTC TGTTGCAAGA CTGA
 
Protein sequence
MQTGLDFTLV EDLVAGVDEV GRGPLCGAVV TAAVILDPAK PILGLNDSKK LTEAKREKLF 
VEIQEKALCW FIARAEVEEI DQLNILHATM LAMKRAVEGL SITPKLALID GNRCPQLSVP 
SAPVVKGDSK VPAIAAASIL AKVSRDREMA ALELIYPGYG IAGHKGYPTP VHLEALARLG 
PTPIHRRSFG PVRTAHEARA AIMLGGSIPL PVGLLQD