| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1547 |
|---|
| Symbol | lpxB |
|---|
| ID | 1183184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1706509 |
|---|
| End bp | 1707651 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637392919 |
|---|
| Product | lipid A disaccharide synthase |
|---|
| Protein accession | NP_791372 |
|---|
| Protein GI | 28868753 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0763] Lipid A disaccharide synthetase |
|---|
| TIGRFAM ID | [TIGR00215] lipid-A-disaccharide synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGTC CCTTACGTAT CGCACTGGTC GCTGGCGAGG CCTCCGGCGA TATCCTCGGA
TCCGGCCTGA TGCGTGCCCT GAAAGCACGT CATCCCGATG TTCGTTTCAT CGGTGTGGGC
GGCCCGCTGA TGGAAGCCGA GGGCATGCAG TCCTATTTCC CGATGGAGCG TCTGTCGGTG
ATGGGGTTGG TGGAGGTGCT GGGGCGGCTG CGCGAGCTGC TGGCCCGACG CAAATTGCTG
GTTCAGACCC TGATCGATGA AAAGCCCGAT GTGTTCATCG GCATCGATGC ACCGGATTTC
ACGCTCAACA TCGAGCTACA GCTACGTCGC GCCGGTATCA AGACCGTGCA CTACGTCAGC
CCGTCGGTCT GGGCCTGGCG TCAAAAGCGC GTGCTGAAGA TCCGCGAAGG CTGCGACCTG
ATGCTCACGC TACTACCTTT CGAGGCGCGT TTTTACGAAG AGAAGGGCGT GCCGGTGCGT
TTTGTCGGCC ATCCGCTGGC AGACACCATT CCACTTGAAT CCGATCGTGG CGCCACCCGC
GCCGAGCTGG GCCTGTCGGT CGACGGTCCG GTTGTTGCGT TGATGCCGGG CAGCCGGGGA
GGCGAGGTCG GTCGTCTGGG CGCATTGTTT TTTGATGCCG CCGAGCGCCT TCTGGTCGAG
CGTCCTGGCT TGCGCTTCGT GCTGCCATGC GCCAGCCCGC AGCGCCGGGC TCAGGTGGAG
CAACTGCTGC AAGGTCGCGA TCTGCCGATC ACTTTGCTCG ACGGGCGCTC GCATGTGGCG
CTGGCCGCCT GCGATGCGGT GCTGATCGCC TCTGGCACTG CCACGCTGGA AGCCCTGCTT
TACAAGCGTC CGATGGTGGT CGCCTACCGC ATGGCACCGT TGACGTTCTG GGTGCTCAAG
CGGCTGGTCA AAAGCCCTTA CGTGTCTCTG CCCAATCTGC TGGCCCAACG CTTGCTGGTG
CCTGAACTGC TGCAGGATGA TGCAACCCCC GAAGCGCTTG CACGGACGCT ATTGCCGCTG
ATCGAAGACG GCCACGCGCA GACTGAAGGT TTTGATGCCA TTCACCGCAT CCTGCGCCGT
GATGCCTCCA ATCAGGCCGC CGATGCAGTG TTGAGCCTGC TCGGCCTGCC ACTTTCACTG
TGA
|
|---|
| Protein sequence | MTSPLRIALV AGEASGDILG SGLMRALKAR HPDVRFIGVG GPLMEAEGMQ SYFPMERLSV
MGLVEVLGRL RELLARRKLL VQTLIDEKPD VFIGIDAPDF TLNIELQLRR AGIKTVHYVS
PSVWAWRQKR VLKIREGCDL MLTLLPFEAR FYEEKGVPVR FVGHPLADTI PLESDRGATR
AELGLSVDGP VVALMPGSRG GEVGRLGALF FDAAERLLVE RPGLRFVLPC ASPQRRAQVE
QLLQGRDLPI TLLDGRSHVA LAACDAVLIA SGTATLEALL YKRPMVVAYR MAPLTFWVLK
RLVKSPYVSL PNLLAQRLLV PELLQDDATP EALARTLLPL IEDGHAQTEG FDAIHRILRR
DASNQAADAV LSLLGLPLSL
|
|---|
| |