| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1538 |
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| Symbol | uppS |
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| ID | 1183175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1696874 |
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| End bp | 1697629 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637392910 |
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| Product | undecaprenyl diphosphate synthase |
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| Protein accession | NP_791363 |
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| Protein GI | 28868744 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0020] Undecaprenyl pyrophosphate synthase |
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| TIGRFAM ID | [TIGR00055] undecaprenyl diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.950032 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAAAAAA TAAAATCGGC CGGACCGTCC TCGGTACCGC GCCACGTCGC GATTATCATG
GATGGCAATA ATCGCTGGGC CAGAAAACGC CTGTTACCGG GTGTGGCTGG CCACAAGGCG
GGTGTCGACG CTGTGCGGGC TGTTATCGAG GTCTGCGCCG AAGCCAAGGT TGAAGTGCTG
ACATTGTTCG CGTTCTCCAG CGAGAACTGG CAGCGCCCGG CCGAAGAGGT TGGTGCGTTG
ATGGAGCTTT TTTTCACGGC ATTGCGCCGT GAAACCAAGC GCCTGAACGA GAACGACATC
AGCCTGCGGA TTATCGGTGA CCGTTCGCGC TTTCACCCTG AGCTTCAGGC TGCGATGCGT
GAAGCGGAAG TGCGTACGTC CGGCAACAGC CGCTTTGTGC TACAGATCGC TGCCAACTAC
GGCGGGCAGT GGGACATCGC GCAAGCGGCC CAGCGGCTGG CGCGCGAGGT TCAGGCAGGG
CATCTGCAGC CGGAGGACAT CACTCCCCAG TTGCTGCAGA CCTGTCTGGC AACGGGCGAT
CTGCCGTTGC CTGACCTGTG CATTCGCACC GGTGGCGAGC ACCGCATCAG CAATTTTCTG
CTTTGGCAGC TGGCTTACGC CGAGCTGTAC TTCTCCGACC TGTTCTGGCC GGACTTCAAA
CACGATGCCA TGCGCGCCGC GCTGGCAGAT TTCGCTTCTC GCCAACGTCG CTTCGGTAAG
ACCAGCGAAC AGGTAGAAGC TGGAGCCCGG GCTTAA
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| Protein sequence | MEKIKSAGPS SVPRHVAIIM DGNNRWARKR LLPGVAGHKA GVDAVRAVIE VCAEAKVEVL
TLFAFSSENW QRPAEEVGAL MELFFTALRR ETKRLNENDI SLRIIGDRSR FHPELQAAMR
EAEVRTSGNS RFVLQIAANY GGQWDIAQAA QRLAREVQAG HLQPEDITPQ LLQTCLATGD
LPLPDLCIRT GGEHRISNFL LWQLAYAELY FSDLFWPDFK HDAMRAALAD FASRQRRFGK
TSEQVEAGAR A
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