| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1527 |
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| Symbol | csdA |
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| ID | 1183164 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1684163 |
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| End bp | 1685368 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637392899 |
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| Product | cysteine sulfinate desulfinase |
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| Protein accession | NP_791352 |
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| Protein GI | 28868733 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0520] Selenocysteine lyase |
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| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.937729 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCCTCC TCTCTCCTTG GCGCGCCGAT TTTCCGGCCA TCGCCGCACT GCAACGGCAA
GGCCAGACGT ATCTGGACAA CGCCGCCACC ACGCAAAAAC CGCAGGCGCT GATTGATGCC
CTGACTCATT ACTACACCAA CGGTGCCGCC AATGTGCATC GCGCCCAGCA TTTGCCCGGC
GCGCACGCTA CCCAGGCGTT CGAGGCCAGC CGCCTCAAAG CCGCCCACTG GCTGAATGCC
GGCGAAAGCG GGCAGATCAT CTTCACCCAC GGTGCCACTT CTGCGCTCAA CCTGCTCGCC
TACGGGCTGG AGCATGAATT TACCGCAGGC GACGAGATCG CCCTCAGTGC CCTGGAACAC
CACGCCAACC TGTTGCCATG GCAGCAACTG GCTCAGCGCC GCGACCTGAA ACTGGTGATT
CTGCCGCTTG ATCGCGACGG CGTGATCGAC CTGGACGCTG CGACCAGCCT GATCGGACCA
CGCACGCGCC TGCTGGCGGT CAGCCAGCTT TCCAACGTGC TCGGCACCTG GCAACCGCTG
GCGCGCCTGA TCGCCCTGGC TAAGGCACAA GGTGCACTGA CGGTGGTCGA CGGTTCGCAA
GGCGTGGTGC ACGGTCGCCA CGACGTTCAG GCATTGGGCT GCGACTTCTA TGTATTTTCC
AGTCACAAGC TTTATGGCCC GGAAGGACTC GGCGTGCTGT ACGGGCGCAA CGACGCACTG
CCAAGCCTGA CGCACTGGCA GTTCGGCGGC GAAATGGTGC TGACTGCCGA CTATCAGCAC
GCGAAATTTC GTCCTGCACC GCTGGGCTTC GAGGCGGGCA CGCCGCCCAT CGCCAGCGTG
ATCGGCCTCG GCGCCACGCT GGACTATCTG GACAGCCTCG ATCATCAGGC GGTTGCTGAA
CACGAAGCCA GGCTGCACCG CCGCCTGCTG GAAGGCTTGC AACAGCGCGA TGGCATACAA
GTGCTGGGCG CACCAGACCT GGCATTGGTC AGCTTTGTCG TGGACGGCGT GCACAATGCC
GATCTTGCGC ATTTACTGAC CGAACAGGGC GTCGCTGTGC GTGCCGGTCA TCATTGCGCG
ATGCCGCTGC TCAAGACGCT TGGCTTGCCT GGCGCAATTC GGGTTTCGTT GGCGCTGTAC
AACGATTCGG ATGACCTGCT GCGGTTCTTC AGCGCACTGG ATCAGGCGCT GGAGCTGCTT
CGATGA
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| Protein sequence | MPLLSPWRAD FPAIAALQRQ GQTYLDNAAT TQKPQALIDA LTHYYTNGAA NVHRAQHLPG
AHATQAFEAS RLKAAHWLNA GESGQIIFTH GATSALNLLA YGLEHEFTAG DEIALSALEH
HANLLPWQQL AQRRDLKLVI LPLDRDGVID LDAATSLIGP RTRLLAVSQL SNVLGTWQPL
ARLIALAKAQ GALTVVDGSQ GVVHGRHDVQ ALGCDFYVFS SHKLYGPEGL GVLYGRNDAL
PSLTHWQFGG EMVLTADYQH AKFRPAPLGF EAGTPPIASV IGLGATLDYL DSLDHQAVAE
HEARLHRRLL EGLQQRDGIQ VLGAPDLALV SFVVDGVHNA DLAHLLTEQG VAVRAGHHCA
MPLLKTLGLP GAIRVSLALY NDSDDLLRFF SALDQALELL R
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