| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1523 |
|---|
| Symbol | dapE |
|---|
| ID | 1183160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1678960 |
|---|
| End bp | 1680111 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637392895 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | NP_791348 |
|---|
| Protein GI | 28868729 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCCC CCGCCGACCT CTCGCCTACC CTCCAACTTG CCTGCGACCT GATCCGCCGA
CCATCGGTCA CGCCGGTCGA TGCCGATTGC CAGACGGTGA TGATGCAGCG CCTGGGCGAT
GCCGGCTTCA AGCTTGAGCC GATGCGCATC GAAGACGTCG ATAATTTCTG GGCCACTCAC
GGCACCCGCG AAGGGCCGGT ACTGTGTTTC GCCGGTCACA CCGATGTGGT GCCGACCGGA
CCGGTGCAGG ACTGGCAGAA TGATCCGTTC GATGCCCTGA TCGACGAGCA CGGCATGCTC
TGCGGACGTG GCGCTGCAGA TATGAAAGGC AGCCTGGCGG CAATGCTGGT CGCAGCCGAG
CGCTTCGTGG CAGACCACCC GGACCACAAG GGTTCGGTGG CATTTCTGAT CACCAGCGAC
GAAGAAGGTC CGGCGCATCA CGGCACCAAG GCCGTTGTTG AGCGCCTGGC CGCGCGCAAT
GAACGTCTGG ACTGGTGCAT CGTCGGAGAG CCTTCCAGCA CCACGCTGGT GGGCGATGTG
GTCAAAAACG GCCGTCGCGG CTCGCTGGGT GCCAAGCTGA CAGTGCGCGG CAAGCAGGGC
CATGTGGCTT ACCCGCATCT GGCGAAGAAC CCGATTCACC TCGCCACGCC TGCGCTGGCC
GAACTGGCCG CCGAGCATTG GGACAACGGC AATGATTTCT TCCCGCCGAC CAGCTTCCAG
ATCTCCAACC TGAACTCCGG CACTGGCGCG ACCAACGTTA TCCCCGGCGA TCTGGTGGCG
GTCTTCAACT TCCGTTTTTC GACCGAATCG ACAGTCGAAG GCTTGCAGCA ACGCGTCGCC
GCCATCCTCG ACAAGCACGA ACTGGACTGG CATGTGGACT GGGCATTGTC CGGCCTGCCG
TTTCTGACCG AGCCGGGCGC GCTGCTGGAC GCGGTGTCGT CCAGCATCAA GAGTGTTACC
GGTCGCGACA CTAAAGCCTC GACCAGCGGC GGGACGTCCG ATGGCCGCTT CATCGCCACC
CTGGGCACTC AGGTGGTTGA GCTGGGCCCG GTCAACGCGA CGATTCACCA GGTCAACGAA
CGCATTCTGG CCAGCGACCT CGACGTGCTG ACCGAGATCT ACTACCAGAC CCTGGTCAAG
TTGCTCGCCT GA
|
|---|
| Protein sequence | MTAPADLSPT LQLACDLIRR PSVTPVDADC QTVMMQRLGD AGFKLEPMRI EDVDNFWATH
GTREGPVLCF AGHTDVVPTG PVQDWQNDPF DALIDEHGML CGRGAADMKG SLAAMLVAAE
RFVADHPDHK GSVAFLITSD EEGPAHHGTK AVVERLAARN ERLDWCIVGE PSSTTLVGDV
VKNGRRGSLG AKLTVRGKQG HVAYPHLAKN PIHLATPALA ELAAEHWDNG NDFFPPTSFQ
ISNLNSGTGA TNVIPGDLVA VFNFRFSTES TVEGLQQRVA AILDKHELDW HVDWALSGLP
FLTEPGALLD AVSSSIKSVT GRDTKASTSG GTSDGRFIAT LGTQVVELGP VNATIHQVNE
RILASDLDVL TEIYYQTLVK LLA
|
|---|
| |