Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1506 |
Symbol | |
ID | 1183143 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1663462 |
End bp | 1664244 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637392878 |
Product | ompA family protein |
Protein accession | NP_791331 |
Protein GI | 28868712 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTAAAC AATTGATGAT CCCTGCTCTG CTGGCCATGA GCGTTGCGTT GGCAGCCTGT GCAACCAAGC CTAACCCTAA CCTGGAACAG GCACGCAGCA ACTTCACCGC GCTGCAGACC AACCCTGAGT CCACCAAAGT CGCCGCCCTG GAAACCAAGG ACGCGAGCGA ATGGCTGGCC AAGGCAGAGC AGGCGTTCCG TAATGATGAC GACGTCAAGA AAGTCGATCA GCTTTCTTAC CTGACCAACC AGCGCGTCGA GCTGGCCAAG CAGACCATCG CCCTGCGCAC CTCCGAAGCC GCTCTGCAGA ACGCTTCTGC CGACCGTGCC AAGGCTCGCC TGGAAGCGCG TGACGCTCAG ATCGCTGCGC TGAAAAACAG CCTGAACGCC AAGCAGACCG AACGCGGTAC GCTGGTGACT TTCGGTGACG TGCTGTTCGA CTACAACAAG GCCGAGCTGA AGCCAACCGC CCAGGGCGAC ATCGGCAAGC TGGCTGCGTT CCTGCAGGAA AACACTGACC GCAAAGTGAT TGTCGAAGGC TACACCGACA GCACCGGTTC GGCTTCCTAC AACCAGTCGC TGTCCGAGCG CCGCGCCAAT TCGGTTCGTA TGGCACTGGT CCGCATGGGT GTAGACCCGG CGCGCGTTGT GACCATGGGT TATGGCAAGG AATATCCGGT TGCTGACAAC TCCAGCAACT CGGGCCGCGC CATGAATCGT CGTGTGGAAG TGACCATTTC CAACGACAAC CAGCCTGTTG CCCCACGCTC GTCGATGAAA TAA
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Protein sequence | MRKQLMIPAL LAMSVALAAC ATKPNPNLEQ ARSNFTALQT NPESTKVAAL ETKDASEWLA KAEQAFRNDD DVKKVDQLSY LTNQRVELAK QTIALRTSEA ALQNASADRA KARLEARDAQ IAALKNSLNA KQTERGTLVT FGDVLFDYNK AELKPTAQGD IGKLAAFLQE NTDRKVIVEG YTDSTGSASY NQSLSERRAN SVRMALVRMG VDPARVVTMG YGKEYPVADN SSNSGRAMNR RVEVTISNDN QPVAPRSSMK
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