| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1492 |
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| Symbol | |
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| ID | 1183129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1642132 |
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| End bp | 1648086 |
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| Gene Length | 5955 bp |
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| Protein Length | 1984 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637392865 |
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| Product | leucine-rich repeat domain protein |
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| Protein accession | NP_791318 |
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| Protein GI | 28868699 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.286213 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAGATC CATCCCTGGC GGGCATTGCT CCAGCAAACC CGCACGTGCA ACTTATAGAA
GACCACTCGC CTGACTGGCT GCTTGAGGCA GAACCCGCCA CTCATGCGGC CTTGCGCAAG
GCGTCCGCTG TCGCGCCGCA ATGGCTGGCC AACGCACGCG AGTCCAGCCC CGAACAGGGC
GCGGCATTGC AACGCCTGTA CGCCGAACAC CGCGAGAACG AACAAAAGGT CCGCCCGACG
CTCGATCGTC TGTCCACGCT TGAAGACTTT GCCAGGCCCT TGCTGACGGC AGCCATCAAC
GAGCGCTTCG GCGTAGACGT GGATGTTGAC AAGACCTGGC TGTTCCATGC GGGCCGGGCA
ACGGTCGACC AGTCGTTCAT TTCGGCCTCC AAAGACCCGC TGGCCCAAGC CAGCATCGCC
CTGAGGGCCG CCACCCAGAG CCTGCTCAAG GCGGCGTTGC AAAATTTCGA GGCCTGGGAA
ACAGCAAACG GCGCGATGGA CTCGGACTCC GGCATCAAGG CCGCGGTGTT TTCCGCATAT
GAAATCATCG GTACGCAGAT GACCGGCAAG TCGGTACCGA TCTCCCCCAC CGGGTTTGCA
GCGCTGTGCC GTGAACTGGA CCTGGGCGGC AAGTATCAGA CGCACCTCGA ATCCGCATTC
AGTACGCCTG CGACACTAGG AGAAACGGCC GACAGGATCC GAGACAACTT CATACAACTG
GAGTCGTCAT CCATCAGGCT TCAGTTACAA ATAGCCACGT TGAAGGGGCT GATCAGCCAG
CCGCTACATG ACGCGGTACT GGACATTGTT GCGGGCAAGC GCAACGTTCA ACTCGATAAC
CTGCCCGTGA AGTGCAGCGT GCTGCGCTTA TGGGATGTCG AACTGACCGG CATTGTGGTG
TTTGGCAAAG ATCGCGAGGT GGCCACTCAG GTGGAAAAAA TCGTCGTTTA TATACCCGAC
GATCCCATTG CGCCGCTGAA AGAATATGAC TCGGCTGAAG CATTCCTGAG TTCATTGCGC
GACCGGATGT TCGTTGACGG GTACCTGAAC TTCTTCCAGC GTTTCATTCC GGCGCGACAC
CGAAGTACGC TGTATGGAAA ATTGCTTGAA CGCCTGCACC CCAAGGTCAA GAAAGGCGGT
TTCTTCGAGG GCCAGTGGTT AGAACAGGAA GCAGACCGAA ACGCCCGGCT GGACCTGAGA
GAAACCCCGC TCGGCGGCGT GTTGCTCGAC AACCTGCACG ATCGCAAGCT TGCCGCCCTG
CGCGACGACG CATTGTTCCA CGGCGTGCCC ACTGCGTCAG AGGACCAAAA GACCTTCGAT
GAGCGTGTGC AGTATTTCAA GGACACTGCA TTCAATGTGC TGAATATCGC AGCCTTCGTC
GTCCCCGGGC TGGGCGAAGT CATGCTGGCC GTGACAGCCG CGCAACTGAT CCACGAAGTG
TATGACGGCG CACAAAGCTG GGCGCATGGC GAACGACAGC AGGCCTTTGC CTACCTGTTC
GATGTAGTAG AGAACATCGC ATTGATGTCA GCCCTGGGCG CAGCCGTGGC CAGTGGTTCG
GGCATTCCAG CCGTGCAGGT GCCTGAGTTC GTCAGCAGTC TGCAGGCGGT GGAGCTGCCG
GACGGCGCGA CGCGGCTTTG GAAACCGGAC CTGTCACCGT TCGCCCATGA CATCGTGCTG
CCGAAGGGTT TGCAGCCCGA TGAACTGGGC CTCTACCACT GGCAAGGCAA ACAGTGGCTG
CCTGTCGACG GGCAGACCTA TTCGGTCAAA CCGGCGGCAA CCGACGGCGA TTATCTGATC
GAGCACCCTA CCCGGACCAA CAGCTATCAG CCGGCCTTGC GGCATAACGG CGCGGGAGCC
TGGTTGCATG AACTTGATCG GCCACTGGAG ATGGAGGGCC TGACCCTGTT TCGGCGGCTT
GGGTACTCCA GGGACGCGTT TTCCGATGTC ACGGCGCGAC GCATCCTGCG CGTCAGTGAC
ACAACCGAAT CAGTCATGCG CCGCGCACTC CATGAGCAAC AACCCGCGCC TGCCCTGCTG
GAAGACACTG CACGCCGGTT CAGGCTGGAT CAGCAAATCG ATCGCGTCAT CGAACAGATG
GAAGCCGGTG ACATCCACGC GGACGCCTCC CTCCAGCTGG ATTTGCTGAG TCAGGAACCC
GCCTGGCCCG GCAATCGTGC GCTGGTGCTG GTGGATGGCG ACGGCAACAC CCTCGGTACA
TTTCCACCGG CACGCCAGGC TACTCCCGAT AACGTTCTGC GCATTCGTGC CGACCAGCCG
GACGCGCTGC GCCAGGCGCT TGAAGGCTTA AGCAATAACG AGATCAGAAC CCTGCTCGAT
GAAGAGTTCG GCGCAGGCCA GCTCGGCATG TCGCCCAGGT TGACCACGCT GCGGACCCGC
CTGGTTGCCA GCGCCCGAAG GAGCAGAGCC TGGCTGTTTG AATCCCGTTA CCGCACACTG
AAAATCGGCG ATGTGGACGG CACTCCAACC CTCCAGAAAG CCTTTGGCGG GCTGCCTCCC
ATGGTTGCGC AAGAGCTTGC CAGCCACGCA TTGCCTGCGG AACGGGTTCA GCTTGTAAAA
GATCACCGCG TACCGTTGCG AATGGCCGAG GAAGCCACTG TTTATCTGCA AAAGACACGT
TTGGCACGTG CCTACGAAGG GCTTTACCTG ACGTCGGTTT CCAGCGCCGA TAGCGAGTGT
CTTGCCCTTC ACAGCCTTGA GGCCCTGCCG CAATGGCCAG CACAGGTCCG ACTGGAAGTC
CGCAATCGTT ATTTCAGCGG TGCATTGATC GACAGCATCG GCCCGCAGGA CGCTCCGATT
CGCAAAGTGC TGATCAGCGA TGGCAGCCGT TATGAAGTCC GTGACGCTGA CGATCAGCAC
CTGCATGGCC TGGACGACCT CTATGCGTCC GTACTCCACG CCTTGCCGGA TGCCCAGCGC
AGCCAGTTGG GTTTTCCCCA TGCAGGTCAG GGGCAGGACC TGAAGAGACT GGTTCAGGAA
AATCCTTTAT CCCGTCAGAA ACTCGCACCC TTGCTGAAAA TGCAGGCTAT CAAGCCTGGC
TCCAGATCGC CCATGCGCCT GGCCGACGGC CGCCTGGGTT ACCCGTTGAG CGGACGCGGC
AGGATCGACT GGTACACGAC CGACGAAAGC CTGCTGGACA AGATCCGCAC GCTGGAGCTG
GAAGATGCCT TCCCGGAAGA CATTCTCAAC CGCCTGCGCC ACACCGGCTG GGACAACAGG
GCCATCGATG ATCGACTCAA CACGCTGCTG GGCGAACAGC TGGATCTGCG TGCAAGCCTT
ATCGTCTGGA CCGATGAAGT CACCACATTT CTACAGATGA GCCAGGCACA TGTGGACAGT
CGAGAGCGCA TCAGTGAGGC CATCTGGAGC CACTGGCGCC TCAACAATCT GCCCGAGATC
GGGCGTACGT TCGAGCCGCT GCGTTTGCAG TACGTGTCCC TGACAGATTT CCCCCGACAC
TTGCCGGACT TTGTCTATAA CCGCGTCACC GCGTTGCACC TGGAAAACAT CTCGATTGAA
ACCCGAGTAC GTCCCGGTGT TGAGAGCACA ACGCCTGCCG AGCCGAATCT GCCCCGGCAA
TTGACCAACA CGTTCGAGCT GGGGCATTTC CTGCGACGCT TCCCGCAGGC GCAATCACTG
AACCTGGTCA GTGAGCCCAG CGCAGGGCTC GACCCTGAAA CCTCGACATT CATCAACCTG
CCCCAGCAAA TATCCAGCGT GCTGCCACAG CTCACCGAGC TGGGGCTGAT CAATCAGGGC
ATCTTTCTCG ATCAGCCGCA GATGAGTCAC TTTCGCGATA TGCCTGCTCT TAGAACGCTG
GACCTCAGCG GCAATCGTCT GGTCAGCCTG TTGCCTATGG ACCTTGGCTG GCTGCGTCTC
GATCGACTGG TGCTTGAGCG GGTCGGTATG TACCGTTGGC CTTCATGGCT GACTGACATG
ATCCCGAGCA ATATTCGTGA GCTTTCGGTG GCTCACAATA ACCTGACCGA ACTGCCTGGC
TGGATTCTCG ACAACCCGCC CAGCCTGGAA CATCAGACGC TGATCGACTT GCGCGGTAAC
AGTCTGTCCC GGCACACCGC AATACAGGCG CGCATCAACG AGGCAGTTTC CGGCCGCGCC
TTCAGGTTTG TCATGGACAC CCCGCTCGCG GTGCAGGCCG CGGTGAACAT GCAACTGCAG
CAGGGCGCCG AGTTGGTAGT GGCGCTTGAT CAGTGGACAA ATGCGTCAAG CTCACTGGCG
ATACCGAGCG AGCAGACAAT AGCGGCGCGA CGCCAGATCG GTTTGCTGCT GATTGATCAC
TGGCGCACGT TCAGCCTGGG GCATATCCAT ACGCCGCTGC GCCTGGTCGA TATTGCCCTG
GCGGATTTTC CCCGACAGTT GCCGGACTTC TTCTGTCGTC AGGTGCGCTA CCTGCACCTG
AGCAGAGTCA CCGGAACAGC GTCTGACCTC GACCAGTTGC TGCGGCGCAT GACTGATCTG
AATTCGCTGG AAATGAGCGG CCATGTGATA CCGCTGACCC GGCTGCCGGA AGCGCTGCTG
GAACTTCGCG CACTGCGTTC GTTGTGCCTC AACGATCAGG GCCTGCTTCT CGAGCAACAA
CACATCGATT TTTTCAGCCG TATTCCGACG CTTGAACGGC TGGAACTCGA TGGCAATCGG
ATAGGTGCCA TTACCGACCT CTCCAGCCTC AACTACACCG CCCTCAACTG GCTGTCGCTG
AACAATGTCG GGCTGAGCGA ATGGCCAACC TGGATCGATG AAATGATTCC GTCGCCCCTG
AAAACGCTTC TGCTGGAGGG CAATCTGATC ACTGACTTGC CGGAAAACAT TCTCGCCAAT
CCCGCTAGCC AGCATTCGCA CACGGAAATA AGCCTGCTGA ACAACCCGCT TTCCGAAGCA
ACCATGCGCA GTGCGCAGAT GTCGGAGCGT TACGGACGTG CCTTCACCTT CGACATGGAC
CTACCGCCCG AACTCAGCGG CATGGACTGG ACAGAAAGCC GTGACTCCGA CGGGTCAATA
TCGGATTACA TGCCTTCCGA CGAGAGCCGC TCTTCCACCC CGGAGCCCGT TACTGTCGAG
CCTTGGCTGG AAGAATCGCA CCCCATGAGC GCAGAGCGCC TCCAGATCTG GGAGCAACTG
GAAGCCGGTG AACACACACG CAATCTTCTG GAGCTGATCG ATTCACTGCG TCTCAGCGCC
GATTACCGCA ACATGGCCAG TCGATCAGCA TTACGAGAGC GTGTCTGGAC AGTGCTCGCC
ACCGCGAATC AGGACCCACA GTTGTGCATG ACCCTCAACG CTATTGCCGA AGAGCCGCTC
AGGCTGTTTC ACGATAACGC TACCTGCTCG GACGGCATCG TTCTGGAGTT CAATCAGATG
GAGGTGCTGA TCTTCACTCG CCAGTCCTTG CAAAACGTCG TTACCGAGCA GCGCGGTGCA
ACGCTTTATC AGTTGGCTGT CCGGCTTTAT AGGTTATCCG AGCTGGACGC GGCTGCTCGC
GAACAGGCTG GAGACAGAGA CGAGGCCGAA GTCCGCCTGG CGTATCGCGT GCACTGGGCA
AGTGCACTGA ACCTGCCCGT GCCGCCGGAG CACATGCTGT TCGAGGTCCA CGCGCGTATT
CGACCGGGGG AACTCGACAC TGCCCTGCTT CGCGTGCGGA CCGGCGAACA GGGCGAGCCG
TTCCTGAGTT TTGCGGCGCA ACAGGATTTC TGGGTCAGTT ATTTGCGGGA AATTCATGCA
GGCCGTTTTG AGGCACTTGA ACGCGTCTAT CGAACCGACC TGACCCGACT TACCGACGAA
TTCGAGCGAC GTAATATCAG CCTCGACAAC CCGGAATACG AAAATCGAAT TCAAGAGTTC
GAAGCCCGGT TCAAGCAGCA ACAGGCCACG CTCATCCGTG AGCTGACCAA TGCCGAGGGG
CTGGAACACC CTTGA
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| Protein sequence | MLDPSLAGIA PANPHVQLIE DHSPDWLLEA EPATHAALRK ASAVAPQWLA NARESSPEQG
AALQRLYAEH RENEQKVRPT LDRLSTLEDF ARPLLTAAIN ERFGVDVDVD KTWLFHAGRA
TVDQSFISAS KDPLAQASIA LRAATQSLLK AALQNFEAWE TANGAMDSDS GIKAAVFSAY
EIIGTQMTGK SVPISPTGFA ALCRELDLGG KYQTHLESAF STPATLGETA DRIRDNFIQL
ESSSIRLQLQ IATLKGLISQ PLHDAVLDIV AGKRNVQLDN LPVKCSVLRL WDVELTGIVV
FGKDREVATQ VEKIVVYIPD DPIAPLKEYD SAEAFLSSLR DRMFVDGYLN FFQRFIPARH
RSTLYGKLLE RLHPKVKKGG FFEGQWLEQE ADRNARLDLR ETPLGGVLLD NLHDRKLAAL
RDDALFHGVP TASEDQKTFD ERVQYFKDTA FNVLNIAAFV VPGLGEVMLA VTAAQLIHEV
YDGAQSWAHG ERQQAFAYLF DVVENIALMS ALGAAVASGS GIPAVQVPEF VSSLQAVELP
DGATRLWKPD LSPFAHDIVL PKGLQPDELG LYHWQGKQWL PVDGQTYSVK PAATDGDYLI
EHPTRTNSYQ PALRHNGAGA WLHELDRPLE MEGLTLFRRL GYSRDAFSDV TARRILRVSD
TTESVMRRAL HEQQPAPALL EDTARRFRLD QQIDRVIEQM EAGDIHADAS LQLDLLSQEP
AWPGNRALVL VDGDGNTLGT FPPARQATPD NVLRIRADQP DALRQALEGL SNNEIRTLLD
EEFGAGQLGM SPRLTTLRTR LVASARRSRA WLFESRYRTL KIGDVDGTPT LQKAFGGLPP
MVAQELASHA LPAERVQLVK DHRVPLRMAE EATVYLQKTR LARAYEGLYL TSVSSADSEC
LALHSLEALP QWPAQVRLEV RNRYFSGALI DSIGPQDAPI RKVLISDGSR YEVRDADDQH
LHGLDDLYAS VLHALPDAQR SQLGFPHAGQ GQDLKRLVQE NPLSRQKLAP LLKMQAIKPG
SRSPMRLADG RLGYPLSGRG RIDWYTTDES LLDKIRTLEL EDAFPEDILN RLRHTGWDNR
AIDDRLNTLL GEQLDLRASL IVWTDEVTTF LQMSQAHVDS RERISEAIWS HWRLNNLPEI
GRTFEPLRLQ YVSLTDFPRH LPDFVYNRVT ALHLENISIE TRVRPGVEST TPAEPNLPRQ
LTNTFELGHF LRRFPQAQSL NLVSEPSAGL DPETSTFINL PQQISSVLPQ LTELGLINQG
IFLDQPQMSH FRDMPALRTL DLSGNRLVSL LPMDLGWLRL DRLVLERVGM YRWPSWLTDM
IPSNIRELSV AHNNLTELPG WILDNPPSLE HQTLIDLRGN SLSRHTAIQA RINEAVSGRA
FRFVMDTPLA VQAAVNMQLQ QGAELVVALD QWTNASSSLA IPSEQTIAAR RQIGLLLIDH
WRTFSLGHIH TPLRLVDIAL ADFPRQLPDF FCRQVRYLHL SRVTGTASDL DQLLRRMTDL
NSLEMSGHVI PLTRLPEALL ELRALRSLCL NDQGLLLEQQ HIDFFSRIPT LERLELDGNR
IGAITDLSSL NYTALNWLSL NNVGLSEWPT WIDEMIPSPL KTLLLEGNLI TDLPENILAN
PASQHSHTEI SLLNNPLSEA TMRSAQMSER YGRAFTFDMD LPPELSGMDW TESRDSDGSI
SDYMPSDESR SSTPEPVTVE PWLEESHPMS AERLQIWEQL EAGEHTRNLL ELIDSLRLSA
DYRNMASRSA LRERVWTVLA TANQDPQLCM TLNAIAEEPL RLFHDNATCS DGIVLEFNQM
EVLIFTRQSL QNVVTEQRGA TLYQLAVRLY RLSELDAAAR EQAGDRDEAE VRLAYRVHWA
SALNLPVPPE HMLFEVHARI RPGELDTALL RVRTGEQGEP FLSFAAQQDF WVSYLREIHA
GRFEALERVY RTDLTRLTDE FERRNISLDN PEYENRIQEF EARFKQQQAT LIRELTNAEG
LEHP
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