| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1490 |
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| Symbol | |
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| ID | 1183127 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1638947 |
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| End bp | 1641034 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637392863 |
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| Product | sensory box histidine kinase/response regulator |
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| Protein accession | NP_791316 |
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| Protein GI | 28868697 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.135352 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATATCCC CAATTGATTT TCCGGCAGGT GCAAGCAAGG CGGCCGGGAT TATTCGATCA
AAGGACTGGA GCCCGACGTC ACTCGGGCCA ATCGAACACT GGCCAGCAGC GCTGAAAAGC
ACCCTGAATC TGCTCCTCAA CTCGCCGGAA TCGATGTACC TGCTTTGGGG ACCGGAGCTG
GTGTTTTTCC ATAACGACGC TTACGCACCC ATTCTTGGCC CGCGCCAACG TGGGGCAATC
GGCTCGCCGG TTGCCGAGCT GTGGGCTGAC GTCTGGGATC AGGTCGCACC GCTGGCCGCC
GATGCGCTGG CTGGTACGCC GTGTCGCTAC GTGGACATGC CCCTGAGCAT GGCGCGTTTT
GGCGAAGTCG AGCAGACGTG GTGGTCATTT TCCTTCTCGC CGGTGATCGA CGAGAACGGT
GTTATCACTG GGGTTTTCTG TATCACCAAC GAGACCACTC AGCATGTTCT CGACCACCAC
GCGCTGCGCG ACAGCGAACG CAAGCGTCAG GAGTTGATCG ACAAGCTGGT CAGGCAGGAA
CGGCAACAGA CTGCAAGGCT GAAACAACGC ACGCTGGAGC TGAACACATT CTGGGAGATG
TCGCCCGACC CACTGGCAAT ACTCGATTTC AACGGCATGT TTCTGCGGGT CAATCCAGCC
TGGACGGCGA TCCTCGGGCG CACGGAACAG GAACTGGCGG GCAGCTCGAT CATGACCCTG
CTGCACCCGG ACGACGTCGG CAATACCCGG AGCGCGCTGA AACGCACGGT GAATCAGGTG
CTCCCGCTGT TTGAGAACCG CTATCAACAT GTGGACGGGA CGTATAACTG GTTCGGCTGG
ACTGCTGCAC CCGGCAATGG AATCATTTTC GCACTGGGCA AACACCTGAC CCACGAGAAG
CAACGCATCG AGGCCCTGCA CATTGCCGAA GAAGCGCTGC GTCAGTCGCA GAAAATGGAA
GCCGTCGGCC AGCTCACCGG CGGCCTGGCA CACGACTTCA ATAATCTGCT GATGGGCGTG
ACCGGCAACA TGGAGCTGCT GCTGTCGAGG ATTCGCCAGG AACGCTTTAC CGGGCTGGAC
CGCTACATCA ATGCAGCACT GGAGGGCTCC AGGCGCGCGG CGTCTTTGAC CCATCGACTG
CTGGCCTTCT CGCGCCGCCA GACCCTGGCC CCCAAAGCTA CTGATGTCGA TGTGCTGATT
GCCGGCATGG ATGAGCTGAT CAGGCGCACC GTAGGCCCGG CCATCGACAT GCAGGTGGTT
GCGTCACGCG GCCTGTGGTC GACGCTGGTT GACCCGCATC AACTGGAAAA CTCGCTGCTC
AATCTGTGCC TGAATGCCAG GGATGCGATG CCTGATGGCG GCCGATTGCT GATCCAGACT
GCCAATCGCC ATCTGAATGC ATCTGCGGCG ACTCAATACG AGCTGCCCCC CGGCCGGTAC
GTGGAGTTGT CTGTCACCGA TACTGGCACC GGCATGGCGA AAGAGGTTAT CGACCGCGCC
TTCGACCCGT TTTTCACGAC CAAGCCGACG GGCATGGGCA CCGGCCTGGG GTTGTCGATG
ATTTACGGAT TTGCGCGACA ATCCGGCGGT GGCGTGCGCA TCGGCTCGAC CCTCGGGGAA
GGGTCACGCA TATGCATCCT GCTGCCGATG CACGAAGGCG ATGCAGAATC GGTCGCACTG
GATGACGGTC TGTTGACGAT TGCGCCGCAA AGCGCGGGTG ACGAGACCAT TCTGGTCGTC
GATGACGAAC CGGCGGTACG CCTGCTGATC GCCGAACTGC TTGAGGACCT GGGTTACGCC
GTGTTGCAGG CCGAACGGGG CGCCGACGCC CTGGTCGTCC TGCAATCGAA GGCGGCCATC
GATCTGTTGA TTACCGACGT CGGCCTGCCG GGCGGCATGA ATGGTCGTCA GGTTGCCGAT
GCGGCCAGAG AGGTACGACC CGACCTGAAA GTCCTGTTCG TGACCGGTTA CGCTGAAAAC
GCCGCGTTAG CCCACGACAC CCTGGAACCG GGCATGCACG TGCTGCCCAA ACCGTTTGCC
ATCGCCGAAC TGATCGGGCG TGTGACCGAG TTACTGGAAA GCGAGTGA
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| Protein sequence | MISPIDFPAG ASKAAGIIRS KDWSPTSLGP IEHWPAALKS TLNLLLNSPE SMYLLWGPEL
VFFHNDAYAP ILGPRQRGAI GSPVAELWAD VWDQVAPLAA DALAGTPCRY VDMPLSMARF
GEVEQTWWSF SFSPVIDENG VITGVFCITN ETTQHVLDHH ALRDSERKRQ ELIDKLVRQE
RQQTARLKQR TLELNTFWEM SPDPLAILDF NGMFLRVNPA WTAILGRTEQ ELAGSSIMTL
LHPDDVGNTR SALKRTVNQV LPLFENRYQH VDGTYNWFGW TAAPGNGIIF ALGKHLTHEK
QRIEALHIAE EALRQSQKME AVGQLTGGLA HDFNNLLMGV TGNMELLLSR IRQERFTGLD
RYINAALEGS RRAASLTHRL LAFSRRQTLA PKATDVDVLI AGMDELIRRT VGPAIDMQVV
ASRGLWSTLV DPHQLENSLL NLCLNARDAM PDGGRLLIQT ANRHLNASAA TQYELPPGRY
VELSVTDTGT GMAKEVIDRA FDPFFTTKPT GMGTGLGLSM IYGFARQSGG GVRIGSTLGE
GSRICILLPM HEGDAESVAL DDGLLTIAPQ SAGDETILVV DDEPAVRLLI AELLEDLGYA
VLQAERGADA LVVLQSKAAI DLLITDVGLP GGMNGRQVAD AAREVRPDLK VLFVTGYAEN
AALAHDTLEP GMHVLPKPFA IAELIGRVTE LLESE
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