| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1478 |
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| Symbol | xerD |
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| ID | 1183115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1622850 |
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| End bp | 1623746 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637392851 |
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| Product | integrase/recombinase XerD |
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| Protein accession | NP_791304 |
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| Protein GI | 28868685 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0755097 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTGCCA TCGACCACCC GCTGATTGAC CGGTTTCTCG ACGCGCTCTG GCTCGAAAAG
GGCCTGTCCG ATAATACCCG TGACTCATAC CGCAGTGACC TTGCGCTGTT CAACGGCTGG
TTGCAGGAGC GCAACGTCGA TCTGCCCGGT GCCGGGCGCG AAGTGATCCT CGATCACCTT
GCGTGGCGCG TGGAAAATGC CTACAAGCCA CGTTCCACTG CGCGTTTTCT GTCCGGCGCG
CGTGGCTTCT ACCGCTACCT GCTGCGCGAA AAGCTGATTT CCGTCGATCC TACCCTGCAG
ATCGACATGC CTCAGTTGGG CAAACCGTTG CCCAAATCGC TTTCCGAAGC CGATGTCGAA
GCATTGCTTG CTGCTCCCGA CCTGAGCGAG CCCATCGGCG AACGTGACCG TGCCATGCTT
GAAGTGCTGT ATGCCTGCGG TCTGCGCGTG ACTGAGTTGA TCAGCCTGAC CCTGGAGCAG
GTCAACCTGC GCCAGGGCGT GCTGCGGGTC ATGGGCAAGG GAAGCAAGGA GCGGCTGGTG
CCGATGGGTG AAGAGGCCAT CGTCTGGGTC GAACGCTACA TGCGTGGTGC CCGCGACGAG
TTGTTGGGCG GCAAGCCCAG CGACGTCCTG TTCCCCAGCA CCCGCGGCGA CCAGATGACC
CGGCAGACTT TCTGGCACCG TATCAAGCAT CAGGCGACGG TTGCCGGCAT CGGCAAATCC
CTGTCACCGC ACACCCTGCG TCACGCCTTC GCGACTCATT TGCTCAATCA CGGCGCCGAC
TTGCGTGTAG TGCAGATGTT GCTCGGGCAC AGCGATCTGT CGACGACCCA GATCTACACC
CATGTGGCGC GTGCACGGCT GCAGGAAATG CACGCGAAGC ATCATCCTCG GGGATGA
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| Protein sequence | MAAIDHPLID RFLDALWLEK GLSDNTRDSY RSDLALFNGW LQERNVDLPG AGREVILDHL
AWRVENAYKP RSTARFLSGA RGFYRYLLRE KLISVDPTLQ IDMPQLGKPL PKSLSEADVE
ALLAAPDLSE PIGERDRAML EVLYACGLRV TELISLTLEQ VNLRQGVLRV MGKGSKERLV
PMGEEAIVWV ERYMRGARDE LLGGKPSDVL FPSTRGDQMT RQTFWHRIKH QATVAGIGKS
LSPHTLRHAF ATHLLNHGAD LRVVQMLLGH SDLSTTQIYT HVARARLQEM HAKHHPRG
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