| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1475 |
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| Symbol | trmD |
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| ID | 1183112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1619992 |
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| End bp | 1620744 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637392848 |
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| Product | tRNA (guanine-N1)-methyltransferase |
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| Protein accession | NP_791301 |
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| Protein GI | 28868682 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0898876 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCCAGCC TGCGCATAGA AGTCATCAGT CTGTTTCCCG AGATGTTTTC CGCCATCAGC
GAATACGGCA TTACCAGCCG TGCGGTGAAA CAAGGGCTGT TGCAGCTGAC TTGTTGGAAT
CCGCGGGATT ACACCACTGA TCGCCATCAC ACTGTGGATG ATCGCCCATT TGGCGGTGGT
CCGGGCATGG TGATGAAGAT CAAGCCCCTT GAAGATGCTC TGGTTCAGGC CAGGCAGGCG
GCAGGGGATG CGGCGAAGGT GATTTACCTG TCGCCACAAG GCCGCCAGCT GAATCAGGCT
GCGGTACGCG AACTGGCGCA GGAGGAAGCG ATTATCCTCA TCGCCGGTCG TTATGAAGGC
ATTGACGAGC GTTTCATTGA AGCTCATGTC GATGAAGAGT GGTCGATTGG TGACTATGTT
CTTTCCGGTG GCGAGCTGCC GGCGATGGTC CTGATTGACG CGGTTACGCG GCTGCTGCCC
GGAGCTTTAG GGCATGTGGA CTCCGCGGAG GAAGATTCCT TCACGGATGG TCTGCTGGAT
TGCCCGCACT ACACCCGACC TGAGGTGTAT GCGGATCAGC GTGTTCCCGA CGTGTTGCTA
AGTGGCAATC ACGCGCACAT CCGGCGTTGG CGTTTACAGC AGTCCCTTGG GCGGACCTAT
GAACGACGCG CTGATCTTCT GGAAAGCCGC TCGCTTTCTG GAGAAGAGAA GAAGCTGCTG
GCGGAATACA TCCGTGAGCG GGACGATAGT TAA
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| Protein sequence | MASLRIEVIS LFPEMFSAIS EYGITSRAVK QGLLQLTCWN PRDYTTDRHH TVDDRPFGGG
PGMVMKIKPL EDALVQARQA AGDAAKVIYL SPQGRQLNQA AVRELAQEEA IILIAGRYEG
IDERFIEAHV DEEWSIGDYV LSGGELPAMV LIDAVTRLLP GALGHVDSAE EDSFTDGLLD
CPHYTRPEVY ADQRVPDVLL SGNHAHIRRW RLQQSLGRTY ERRADLLESR SLSGEEKKLL
AEYIRERDDS
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