Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1472 |
Symbol | ffh |
ID | 1183109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1617559 |
End bp | 1618935 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637392845 |
Product | signal recognition particle protein Ffh |
Protein accession | NP_791298 |
Protein GI | 28868679 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0541] Signal recognition particle GTPase |
TIGRFAM ID | [TIGR00959] signal recognition particle protein |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0337411 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTGAAA ATCTGACTGA CCGCCTCTCA CAGACGCTGC GCCACGTTAC TGGCAAGGCC AAGCTGAACG AGGACAACAT CAAAGATACC TTGCGCGAAG TGCGTATGGC GTTGCTCGAA GCCGACGTCG CCTTGCCGGT GGTCAAAGAC TTCGTCAACA GCGTCAAGGA GCGTGCTGTC GGCACCGAGG TGTCGCGCAG CCTGACGCCG GGCCAGGCGT TCGTGAAGAT CGTCCAGGCC GAACTCGAAA GCCTGATGGG CGCCGCCAAC GAAGACCTGG TGCTCAATGT CACGCCGCCT GCGGTCATCC TCATGGCTGG CTTGCAGGGT GCGGGCAAGA CCACCACTGC CGGCAAGCTG GCGCGGTTCC TTAAAGAGCG CAAAAAGAAA ACCGTGATGG TGGTGTCGGT CGACGTTTAC CGTCCCGCCG CCATCAAGCA GCTTGAAACC CTGGCCAACG ACATCGGCGT GACGTTCTTC GCGTCCGACA TCAGCCAGAA GCCGGTGGAC ATCGCCCTGG CTGCCATCAA GGAAGCCAGG CTGAAGTTCA TCGACGTGGT CATCGTCGAT ACCGCCGGTC GTCTGCACGT CGATGTCGAG ATGATGGGCG AGATCCAGGC GCTGCACGCT GCGACCAAGC CAGCCGAAAC GCTGTTCGTG GTCGATGCCA TGACCGGTCA GGATGCGGCC AACACCGCCA AGGCATTCGG CGATGCGCTG CCGCTGACCG GTGTCATCCT GACCAAGGTC GACGGTGATG CTCGTGGCGG TGCTGCACTG TCGGTGCGTG CAATCACCGG CAAGCCGATC AAGTTCATCG GTATGGGCGA GAAGAGCGAG GCGCTGGAGC CGTTCCACCC GGACCGTATC GCTTCGCGAA TCCTCGGCAT GGGCGACGTG CTCAGTCTGA TCGAGCAGGC CGAACAGACC CTCGACAAGG ACAAAGCCGA CAAACTGGCG AAAAAACTCA AGAAGGGCAA AGGCTTCGAT CTCGAAGACT TCCGCGACCA GTTGCAGCAG ATGAAAAACA TGGGCGGCCT TGGTGGCCTC ATGGACAAAC TGCCAAGCAT CGGCGGCGTC AACCTGTCGC AGATGGGCAA CGCCCAGGGC GCAGCCGAGA AACAGTTCAA GCAGATGGAA GCGATCATCA ACTCGATGAC GCCAGCCGAG CGCCGCGACC CGGACCTGAT CAGCGGCTCG CGCAAGCGCC GTATCTCTCA GGGGTCGGGC ACTCAGGTTC AGGATATCGG GCGTCTGATC AAGCAGCACA AACAGATGCA GAAGATGATG AAGAAGTTCT CCGCCAAGGG CGGAATGGCG AAAATGATGC GCGGCATGGG TGGAATGCTC CCCGGCGGCG GCATGCCGAA AATGTAA
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Protein sequence | MFENLTDRLS QTLRHVTGKA KLNEDNIKDT LREVRMALLE ADVALPVVKD FVNSVKERAV GTEVSRSLTP GQAFVKIVQA ELESLMGAAN EDLVLNVTPP AVILMAGLQG AGKTTTAGKL ARFLKERKKK TVMVVSVDVY RPAAIKQLET LANDIGVTFF ASDISQKPVD IALAAIKEAR LKFIDVVIVD TAGRLHVDVE MMGEIQALHA ATKPAETLFV VDAMTGQDAA NTAKAFGDAL PLTGVILTKV DGDARGGAAL SVRAITGKPI KFIGMGEKSE ALEPFHPDRI ASRILGMGDV LSLIEQAEQT LDKDKADKLA KKLKKGKGFD LEDFRDQLQQ MKNMGGLGGL MDKLPSIGGV NLSQMGNAQG AAEKQFKQME AIINSMTPAE RRDPDLISGS RKRRISQGSG TQVQDIGRLI KQHKQMQKMM KKFSAKGGMA KMMRGMGGML PGGGMPKM
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