Gene PSPTO_1434 details

Gene Information

• Locus tag: PSPTO_1434
• Symbol: ispG
• ID: 1183071
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 1571550
• End bp: 1572659
• Gene Length: 1110 bp
• Protein Length: 369 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637392807
• Product: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
• Protein accession: NP_791260
• Protein GI: 28868641
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis
• TIGRFAM ID: [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCACGGCG AATCTCCGAT CAAGCGTCGC GAATCCCGAA AAATATGGGT CGGTTCTGTA 
CCGGTCGGCG GCGATGCGCC GATTGCTGTG CAGAGCATGA CCAACAGCGA CACCAATGAT 
GTGGCGGCCA CTGTTGCGCA GATCAATCGT CTGGAAGCGG CCGGTGTCGA TATCGTGCGC 
ATCTCCGTAC CGGACATGGA TGCTGCCGAG GCTTTCGGTC GCATCAAGCA ACTGGTCAAG 
GTGCCACTGG TCGCCGATAT CCATTTCGAT TACCGCATCG CGTTGCGCGT GGCAGAGCTG 
GGTGTCGACT GTCTGCGTAT CAACCCTGGC AACATCGGTC GTGAAGACCG CGTGCGCGCG 
GTTGTCGACG CGGCGCGTGA TCGCGGCATA CCGATCCGTA TCGGCGTCAA CGCCGGTTCG 
CTGGAAAAAG ACCTGCAGAA GAAGTATGGC GAGCCCACGC CAGAGGCGTT GGTAGAGTCG 
GCGCTGCGTC ATGTGGAGCA CCTTGAGCGC CTGAACTTCA AGGACTTCAA GGTCAGCGTC 
AAGGCCTCCG ATGTGTTCAT GGCGGTCGCT GCTTATCGCC TGCTGGCCAA ACAGATTGTC 
CAGCCGCTGC ATCTGGGAAT CACCGAAGCC GGTGGCTTGC GTTCGGGCAC CGTGAAATCG 
GCTGTCGGTC TCGGTATGCT GCTTGCCGAA GGGATTGGCG ATACTATCCG CATCTCGCTG 
GCCGCTGACC CGGTCGAAGA GGTGAAGGTC GGGTATGACA TTCTCAAATC GTTGCGCCTT 
CGTTCCCGTG GGATCAACTT CATCGCCTGC CCGAGCTGCT CGCGGCAGAA CTTTGATGTG 
GTCAAGACCA TGAACGAGCT GGAAGGTCGC CTCGAAGATT TGCTGGTGCC ACTCGATGTC 
GCGGTGATCG GCTGTGTGGT CAACGGTCCT GGCGAAGCCA AGGAGGCGCA TATCGGCCTC 
ACGGGGGGTA CGCCGAACCT GATCTACATC GACGGCAAGC CCGCGCAGAA ACTGACCAAT 
GACAATCTCG TGGATGAGCT TGAACGCTTG ATTCGCGAGA AAGCGGCCGA AAAGACCGCA 
GCCGACGCCT CGGTCATCGT GCGCGGCTAA 

 

Protein sequence

MHGESPIKRR ESRKIWVGSV PVGGDAPIAV QSMTNSDTND VAATVAQINR LEAAGVDIVR 
ISVPDMDAAE AFGRIKQLVK VPLVADIHFD YRIALRVAEL GVDCLRINPG NIGREDRVRA 
VVDAARDRGI PIRIGVNAGS LEKDLQKKYG EPTPEALVES ALRHVEHLER LNFKDFKVSV 
KASDVFMAVA AYRLLAKQIV QPLHLGITEA GGLRSGTVKS AVGLGMLLAE GIGDTIRISL 
AADPVEEVKV GYDILKSLRL RSRGINFIAC PSCSRQNFDV VKTMNELEGR LEDLLVPLDV 
AVIGCVVNGP GEAKEAHIGL TGGTPNLIYI DGKPAQKLTN DNLVDELERL IREKAAEKTA 
ADASVIVRG