Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1427 |
Symbol | hscA |
ID | 1183064 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1565640 |
End bp | 1567502 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637392800 |
Product | chaperone protein HscA |
Protein accession | NP_791253 |
Protein GI | 28868634 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0443] Molecular chaperone |
TIGRFAM ID | [TIGR01991] Fe-S protein assembly chaperone HscA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCCTTAC TGCAAATCGC CGAACCCGGC CTGAGTCCTC AACCGCACCA GCGTCGACTG GCTGTGGGTA TCGACCTTGG CACCACCAAT TCTCTGGTTG CTGCAGTGCG CAGCGGCCTG TCCGAACCGC TGGCCGATGC AGAAGGGCAG GTTATCCTGC CGTCTGCCGT TCGCTATCAC GCGGATCGCG TCGAAGTGGG GCAGGCGGCG AAAGCCGCGG CCTCGCAGGA CCCGTTCAAC ACCGTGCTGT CAGTCAAGCG CCTGATGGGC CGTGGCCTGT CCGACGTCAA GCAGTTGGGT GAGCAGTTGC CTTACCGCTT CGTCGGCGGT GAATCGCACA TGCCGTTCAT CGACACTGTT CAGGGGGCTA AAAGCCCGGT TGAAGTGTCT GCCGACATTC TCAAGGTGTT GCGTCAGCGT GCTGAGGCGG CGCTGGGCGG CGAACTGGTC GGTGCGGTCA TCACTGTTCC GGCCTATTTC GACGACTCTC AGCGTCAGGC GACCAAAGAT GCCGCCAAGC TGGCCGGCCT CAATGTACTG CGCCTGCTCA ATGAGCCGAC CGCTGCGGCC GTTGCCTATG GCCTGGACCA GAAAGCCGAG GGCGTGATCG CCATCTACGA CCTGGGCGGC GGGACCTTCG ATATTTCGAT CCTGCGCCTG ACGGGCGGCG TCTTTGAAGT ACTGGCCACC GGCGGTGATA CCGCGCTGGG CGGTGACGAT TTCGATCATG CAATTGCCAG CTGGATTGTC GCCGACGCCG GCCTGTCTGC CGATCTGGAC CCTTCCGCAC AGCGCAGCCT GTTACAGGCG GCCTGCTCGG CCAAGGAAGC GCTGACCGAC GCCGAGTTCG TCGAGGTTAC TCATGGCGAG TGGCGCGGCA CCCTGACTCG CGACGCGCTC AATGCGCTGA TCGAGCCGAT GATTGCGCGC AGCCTGAAAG CCTGCCGTCG TGCGGTGCGT GACACCGGCA TCGAGCTTGA AGAAGTCGAG GCGGTGGTCA TGGTCGGTGG TTCGACCCGT GTTCCGCGTG TGCGTGAGGC CGTCGCCGAA TTGTTCGGCC GTCAGCCGCT GACCCAGATT GACCCGGATC AAGTGGTGGC CATTGGGGCT GCGATCCAGG CCGACACACT GGCAGGCAAC AAGCGTGATG GTGGCGAGCT GCTGTTGCTC GACGTGATTC CGCTGTCGCT GGGGCTCGAA ACCATGGGCG GGCTCATGGA AAAGGTCATT CCGCGCAACA CCACGATCCC TGTAGCGCGT GGTCAGGAAT TCACTACTTA CAAAGATGGC CAGACGGCCA TGAAAATTCA TGTACTGCAG GGCGAGCGTG AGCTGGTCAG CGATTGCCGT TCCCTGGCGC GTTTTGAATT GCGTGGCATC CCGCCGATGG TCGCGGGTGC GGCAAAGATT CGTGTCACCT TCCAGGTCGA TGCAGACGGT TTGCTCAGCG TTTCGGCGCG TGAAATGGGC TCGGGTATCG AGTCGAGCAT TCAGGTCAAG CCGTCCTACG GGCTGACCGA TGACGAGGTC ACTCGTATGC TCAAGGATTC CTTCGAGTAT GCCGGCGACG ACAAGGTCGC TCGTGTGCTG CGTGAGCATC AGGTTGATGC CGAGCGCCTG CTCGAAGCTG TTCAGGGTGC CCTGGACGCC GATGGCGAGC GTCTTCTCGA CGAAGAAGAG CGCCTGGTTA TCAACCTGCA GATGGACGAA CTCCGTGAAC TGATGCAAGG CACCGATGGT TATGCCATCG AGCAGCAGAC CAAGCGTCTG TCGCAGGTGA CCGATGCATT TGCTGCCCGA CGCCTAGATT CGACGGTAAA AGCCGCACTG GCCGGGCGCA ACTTGAATGA GATTGAGGAG TAA
|
Protein sequence | MALLQIAEPG LSPQPHQRRL AVGIDLGTTN SLVAAVRSGL SEPLADAEGQ VILPSAVRYH ADRVEVGQAA KAAASQDPFN TVLSVKRLMG RGLSDVKQLG EQLPYRFVGG ESHMPFIDTV QGAKSPVEVS ADILKVLRQR AEAALGGELV GAVITVPAYF DDSQRQATKD AAKLAGLNVL RLLNEPTAAA VAYGLDQKAE GVIAIYDLGG GTFDISILRL TGGVFEVLAT GGDTALGGDD FDHAIASWIV ADAGLSADLD PSAQRSLLQA ACSAKEALTD AEFVEVTHGE WRGTLTRDAL NALIEPMIAR SLKACRRAVR DTGIELEEVE AVVMVGGSTR VPRVREAVAE LFGRQPLTQI DPDQVVAIGA AIQADTLAGN KRDGGELLLL DVIPLSLGLE TMGGLMEKVI PRNTTIPVAR GQEFTTYKDG QTAMKIHVLQ GERELVSDCR SLARFELRGI PPMVAGAAKI RVTFQVDADG LLSVSAREMG SGIESSIQVK PSYGLTDDEV TRMLKDSFEY AGDDKVARVL REHQVDAERL LEAVQGALDA DGERLLDEEE RLVINLQMDE LRELMQGTDG YAIEQQTKRL SQVTDAFAAR RLDSTVKAAL AGRNLNEIEE
|
| |