Gene PSPTO_1415 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1415 
SymbolsecD 
ID1183052 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp1554625 
End bp1556493 
Gene Length1869 bp 
Protein Length622 aa 
Translation table11 
GC content59% 
IMG OID637392788 
Productprotein-export membrane protein SecD 
Protein accessionNP_791241 
Protein GI28868622 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.634858 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGAACA AATACCCTCT GTGGAAATAC GTACTGATCC TGGCGGTGCT GGTGGTCGGT 
TTCATTTATT CCGCACCCAA TCTCTACCCT GATGATTCTG CCATCCAGAT CAGCGGCGCG
AGCACTGCGC TGCAAGTCAA TCAGGCAGAC GTGGATCGTG CAGCCAAGGC GCTTACCGAT
GCCGGCATCT CGGTCAAGGC TTCTTCTCTG GCCGAGAATG GCAAGGGCGG TTTGTTGCGT
CTGAGCAAGC AGGAAGATCA GTTACCAGCC AAGGATGTCG TGCGCAAGGC GTTGGGTGAT
GACTATGTCG TCGCACTGAA CCTGGCGCGC ACCACGCCGA CCTGGTTGCG CAACCTGGGC
GCAAGCCCGA TGAAGCTCGG TCTCGACCTG TCCGGTGGTG TGCACTTCCT GCTGGAAGTC
GACATGGACA AGGCGATCGA TGCGCGTCTG AAAGTCTACG AAGGCGAAGT CAAATCCCTG
TTGCGCAAGG AAAAGGCGCG TTATCGCAGC CTGCCGCAGC TGGGCAACGT GATTCAGCTG
GGCTTTACCG ATGATGCAGA GCGCGAGCAG GCTCGTGCAC TGGTGCGCAA GACCTTCACC
GATTTCGAAA TCACGCCTGC CGAGCTGAAC GGTATTCCCG TACTGCGCAT GGCGCTGACC
CCGGCCAAAC TGGCCGAGAT TCGTGAATAC TCGATCAAGC AGAACCTGAC CACCGTCCGT
AACCGGGTCA ATGAGCTGGG TGTTGCCGAG CCGCTGGTTC AGCGTCAGGG TGCCAACCGC
ATCGTGGTCG AGCTGCCGGG TGTGCAGGAC ACGGCCGAAG CCAAGCGTAT TCTGGGCAAG
ACCGCCAACC TCGAGTTCCG TCTGGGCGCA GGCCCGGATG ATTCGAAGGG CACCACCGAA
ATGTTCGAAT TCCGCGAAGG CGGACGTCCG GCAGCGGCAG TGGAGCGTGG TCTGATCATC
ACCGGCGACC AGGTGACTGA CGCCAAGGCC AGTTTCGACG AGCACGGCCG TCCACAGGTG
AACATCAACC TTGATGGTCA CGGTGGCGAA CTGATGAGTC GCGCAACCCG CAGCAATGTG
GGTCGCAGCA TGGCGGTGAT CTTCATCGAG CAACGTCCGA CCACCACCTA CACCAGGCAG
ATGGTCAACG GCGTCGAAAA AGACGTGCCG GTGCAGACCT TCAAGGAAGA AAAGAAAATC
ATCAGCCTGG CGACCATCCA GTCGCCGCTG GGCAGTCAGT TCCGGATTAC CGGTCTGAAT
GGTCAGGGTG AGTCTTCCGA GCTGGCGCTG CTGTTGCGCG CGGGTGGTCT GGCCGCGCCG
ATGTACTTCG CTGAAGAGCG CACCATCGGT CCGAGCCTGG GTGCCGACAA CATCACCAAG
GGTATCGACG CTTCCCTGTG GGGCATGCTG TTCGTATCCA TCTTCATCAT GGCGATCTAC
CGCTTCTTCG GTCTGATCGC TACCGTTGCC CTGGCCCTGA ACATGGTCAT GCTGCTGGCG
CTGATGTCCT TGCTGGGTGC CACACTGACC CTGCCGGGTA TCGCCGGTAT CGTGTTGACC
ATGGGTATGG CGGTGGATGC CAACGTGTTG ATCTTCTCGC GGATCCGTGA AGAGATCGCC
AATGGCATGA CGGTGCAACG CGCTATCAAC GAAGGTTTCG ATCGTGCCTA CACGGCGATC
CTCGACGCCA ACCTGACGAC GCTGCTGGTC GGCGGCATTC TCTTTGCGAT GGGCACCGGC
CCGGTCAAAG GGTTTGCGGT GACCATGTCG CTCGGGATCT TTACCTCGAT GTTCACGGCC
ATCATGGTGA CCCGCGCTAT GGTCAACCTG ATCTACGGCG GTCGTGACTT CAAGAAGTTG
TGGATTTAA
 
Protein sequence
MLNKYPLWKY VLILAVLVVG FIYSAPNLYP DDSAIQISGA STALQVNQAD VDRAAKALTD 
AGISVKASSL AENGKGGLLR LSKQEDQLPA KDVVRKALGD DYVVALNLAR TTPTWLRNLG
ASPMKLGLDL SGGVHFLLEV DMDKAIDARL KVYEGEVKSL LRKEKARYRS LPQLGNVIQL
GFTDDAEREQ ARALVRKTFT DFEITPAELN GIPVLRMALT PAKLAEIREY SIKQNLTTVR
NRVNELGVAE PLVQRQGANR IVVELPGVQD TAEAKRILGK TANLEFRLGA GPDDSKGTTE
MFEFREGGRP AAAVERGLII TGDQVTDAKA SFDEHGRPQV NINLDGHGGE LMSRATRSNV
GRSMAVIFIE QRPTTTYTRQ MVNGVEKDVP VQTFKEEKKI ISLATIQSPL GSQFRITGLN
GQGESSELAL LLRAGGLAAP MYFAEERTIG PSLGADNITK GIDASLWGML FVSIFIMAIY
RFFGLIATVA LALNMVMLLA LMSLLGATLT LPGIAGIVLT MGMAVDANVL IFSRIREEIA
NGMTVQRAIN EGFDRAYTAI LDANLTTLLV GGILFAMGTG PVKGFAVTMS LGIFTSMFTA
IMVTRAMVNL IYGGRDFKKL WI