Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1415 |
Symbol | secD |
ID | 1183052 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1554625 |
End bp | 1556493 |
Gene Length | 1869 bp |
Protein Length | 622 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637392788 |
Product | protein-export membrane protein SecD |
Protein accession | NP_791241 |
Protein GI | 28868622 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.634858 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCTGAACA AATACCCTCT GTGGAAATAC GTACTGATCC TGGCGGTGCT GGTGGTCGGT TTCATTTATT CCGCACCCAA TCTCTACCCT GATGATTCTG CCATCCAGAT CAGCGGCGCG AGCACTGCGC TGCAAGTCAA TCAGGCAGAC GTGGATCGTG CAGCCAAGGC GCTTACCGAT GCCGGCATCT CGGTCAAGGC TTCTTCTCTG GCCGAGAATG GCAAGGGCGG TTTGTTGCGT CTGAGCAAGC AGGAAGATCA GTTACCAGCC AAGGATGTCG TGCGCAAGGC GTTGGGTGAT GACTATGTCG TCGCACTGAA CCTGGCGCGC ACCACGCCGA CCTGGTTGCG CAACCTGGGC GCAAGCCCGA TGAAGCTCGG TCTCGACCTG TCCGGTGGTG TGCACTTCCT GCTGGAAGTC GACATGGACA AGGCGATCGA TGCGCGTCTG AAAGTCTACG AAGGCGAAGT CAAATCCCTG TTGCGCAAGG AAAAGGCGCG TTATCGCAGC CTGCCGCAGC TGGGCAACGT GATTCAGCTG GGCTTTACCG ATGATGCAGA GCGCGAGCAG GCTCGTGCAC TGGTGCGCAA GACCTTCACC GATTTCGAAA TCACGCCTGC CGAGCTGAAC GGTATTCCCG TACTGCGCAT GGCGCTGACC CCGGCCAAAC TGGCCGAGAT TCGTGAATAC TCGATCAAGC AGAACCTGAC CACCGTCCGT AACCGGGTCA ATGAGCTGGG TGTTGCCGAG CCGCTGGTTC AGCGTCAGGG TGCCAACCGC ATCGTGGTCG AGCTGCCGGG TGTGCAGGAC ACGGCCGAAG CCAAGCGTAT TCTGGGCAAG ACCGCCAACC TCGAGTTCCG TCTGGGCGCA GGCCCGGATG ATTCGAAGGG CACCACCGAA ATGTTCGAAT TCCGCGAAGG CGGACGTCCG GCAGCGGCAG TGGAGCGTGG TCTGATCATC ACCGGCGACC AGGTGACTGA CGCCAAGGCC AGTTTCGACG AGCACGGCCG TCCACAGGTG AACATCAACC TTGATGGTCA CGGTGGCGAA CTGATGAGTC GCGCAACCCG CAGCAATGTG GGTCGCAGCA TGGCGGTGAT CTTCATCGAG CAACGTCCGA CCACCACCTA CACCAGGCAG ATGGTCAACG GCGTCGAAAA AGACGTGCCG GTGCAGACCT TCAAGGAAGA AAAGAAAATC ATCAGCCTGG CGACCATCCA GTCGCCGCTG GGCAGTCAGT TCCGGATTAC CGGTCTGAAT GGTCAGGGTG AGTCTTCCGA GCTGGCGCTG CTGTTGCGCG CGGGTGGTCT GGCCGCGCCG ATGTACTTCG CTGAAGAGCG CACCATCGGT CCGAGCCTGG GTGCCGACAA CATCACCAAG GGTATCGACG CTTCCCTGTG GGGCATGCTG TTCGTATCCA TCTTCATCAT GGCGATCTAC CGCTTCTTCG GTCTGATCGC TACCGTTGCC CTGGCCCTGA ACATGGTCAT GCTGCTGGCG CTGATGTCCT TGCTGGGTGC CACACTGACC CTGCCGGGTA TCGCCGGTAT CGTGTTGACC ATGGGTATGG CGGTGGATGC CAACGTGTTG ATCTTCTCGC GGATCCGTGA AGAGATCGCC AATGGCATGA CGGTGCAACG CGCTATCAAC GAAGGTTTCG ATCGTGCCTA CACGGCGATC CTCGACGCCA ACCTGACGAC GCTGCTGGTC GGCGGCATTC TCTTTGCGAT GGGCACCGGC CCGGTCAAAG GGTTTGCGGT GACCATGTCG CTCGGGATCT TTACCTCGAT GTTCACGGCC ATCATGGTGA CCCGCGCTAT GGTCAACCTG ATCTACGGCG GTCGTGACTT CAAGAAGTTG TGGATTTAA
|
Protein sequence | MLNKYPLWKY VLILAVLVVG FIYSAPNLYP DDSAIQISGA STALQVNQAD VDRAAKALTD AGISVKASSL AENGKGGLLR LSKQEDQLPA KDVVRKALGD DYVVALNLAR TTPTWLRNLG ASPMKLGLDL SGGVHFLLEV DMDKAIDARL KVYEGEVKSL LRKEKARYRS LPQLGNVIQL GFTDDAEREQ ARALVRKTFT DFEITPAELN GIPVLRMALT PAKLAEIREY SIKQNLTTVR NRVNELGVAE PLVQRQGANR IVVELPGVQD TAEAKRILGK TANLEFRLGA GPDDSKGTTE MFEFREGGRP AAAVERGLII TGDQVTDAKA SFDEHGRPQV NINLDGHGGE LMSRATRSNV GRSMAVIFIE QRPTTTYTRQ MVNGVEKDVP VQTFKEEKKI ISLATIQSPL GSQFRITGLN GQGESSELAL LLRAGGLAAP MYFAEERTIG PSLGADNITK GIDASLWGML FVSIFIMAIY RFFGLIATVA LALNMVMLLA LMSLLGATLT LPGIAGIVLT MGMAVDANVL IFSRIREEIA NGMTVQRAIN EGFDRAYTAI LDANLTTLLV GGILFAMGTG PVKGFAVTMS LGIFTSMFTA IMVTRAMVNL IYGGRDFKKL WI
|
| |