Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1409 |
Symbol | |
ID | 1183045 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1549288 |
End bp | 1550133 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637392781 |
Product | hypothetical protein |
Protein accession | NP_791235 |
Protein GI | 28868616 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0211733 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAAAAGA CGACCCTATG GGCTTTAGCC TTTGCAATGT TGGCAGGGTG TGGGGTTTCG GGGCCGGCGC CGGGAAGTGA TATTCAGGGT GCCCAGGCAG AGATGAAAAC ACCCGTTAAA CTAAATCTGG ATGCCTACAC CTCAAAAAAA CTGGATGCTG TGCTGGAAGC CCGCACCAAC AAAAGTTATA TGAATAAAGG TCAGCTGATC GACCTTGTAT CAGGAGCGTT TTTAGGAACA CCGTACCGCT CAAACATGTT GGTGGGCTCA GCGAATGTAC CTGAACAATT AGTCATCGAC TTCAGAGGTC TGGATTGTTT TGCTTATCTG GATTACGTCG AAGCGTTTCG AAGATCAACA TCGCAGCAGG ATTTTGTGAG GAATCTCGTT CAGGTTCGTT ACAAGGGTGG CGATGTTGAC TTTTTGAATC GCAAGCACTT TTTCACGGAT TGGGCTTACG GAACGGCATA CCCTGTGGCG GATGACATTA CCGCGCAGAT AAGCCCCGGT GCGGTAAGTG TCAGAAAACG CCTTAATGAA AGGGCCAAAG GCAAAGTCTA TCTGCCAGGG TTGCCTGTGG TTGAGCGTAG CATGACGTAT ATCCCGAGCC GCCTTGTCGA CAGTCAGGTG GTGAGCCACC TGCGCACCGG TGATTACATT GGCATTTACA CCCCGCTTCC CGGGCTGGAT GTGACACACG TCGGTTTCTT TATCGTGACG GATAAAGGCC CTGTCTTGCG AAATGCATCT TCACGAAAAG AAAACAGAAA GGTGATGGAT TTGCCTTTTC TGGACTATGT ATCGGAAAAG CCAGGGATTG TTGTTTTCAG GGCAAAAGAC AATTGA
|
Protein sequence | MQKTTLWALA FAMLAGCGVS GPAPGSDIQG AQAEMKTPVK LNLDAYTSKK LDAVLEARTN KSYMNKGQLI DLVSGAFLGT PYRSNMLVGS ANVPEQLVID FRGLDCFAYL DYVEAFRRST SQQDFVRNLV QVRYKGGDVD FLNRKHFFTD WAYGTAYPVA DDITAQISPG AVSVRKRLNE RAKGKVYLPG LPVVERSMTY IPSRLVDSQV VSHLRTGDYI GIYTPLPGLD VTHVGFFIVT DKGPVLRNAS SRKENRKVMD LPFLDYVSEK PGIVVFRAKD N
|
| |