Gene PSPTO_1404 details

Gene Information

• Locus tag: PSPTO_1404
• Symbol: hrpL
• ID: 1183040
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 1542838
• End bp: 1543392
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 637392776
• Product: RNA polymerase sigma factor HrpL
• Protein accession: NP_791231
• Protein GI: 28868612
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTCAGA AGATTGTGAT CCTCGACTCA ACCCAGCCCC GTCAGCCATC TTCGTCCGCC 
GGTATTCGCC AAATGACGGC CGATCAGATT CAGATGCTCA GGGCGTTTAT CCAAAAGCGG 
GTGATGAACC CTGATGATGT GGATGACATT CTCCAGTGCG TGTTTCTTGA AGCCCTGCGT 
AACGAGCACA AGTTTCAACA TGCCAGCAAA CCGCAGACCT GGCTGTGTGG CATCGCGCTG 
AACCTGATCC GCAATCACTT CCGCAAAATG TATCGTCAGC CGTATCAGGA AAGCTGGGAA 
GACGAAGTGC ATTCCGAGCT GGAAGGGCAC GGTGATGTCA GTCATCAGGT AGAGGGGCAT 
CGGCAACTGG CGCGAGTCAT TCAGGCCATT GATTGCCTGC CGTCGAACAT GCAAAAAGTG 
CTGGAAGTGT CGCTGGAGAT GGACGGCAAT TATCAGGAAA CAGCGAACAG CCTCGGCGTG 
CCGATTGGCA CCGTTCGCTC ACGCCTGTCC CGCGCGCGGG TTCAGCTCAA GCAGCAAATC 
GACCCGTTCG CCTGA 

 

Protein sequence

MFQKIVILDS TQPRQPSSSA GIRQMTADQI QMLRAFIQKR VMNPDDVDDI LQCVFLEALR 
NEHKFQHASK PQTWLCGIAL NLIRNHFRKM YRQPYQESWE DEVHSELEGH GDVSHQVEGH 
RQLARVIQAI DCLPSNMQKV LEVSLEMDGN YQETANSLGV PIGTVRSRLS RARVQLKQQI 
DPFA