Gene PSPTO_1398 details

Gene Information

• Locus tag: PSPTO_1398
• Symbol: hrpP
• ID: 1183034
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 1536004
• End bp: 1536573
• Gene Length: 570 bp
• Protein Length: 189 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637392770
• Product: type III secretion protein HrpP
• Protein accession: NP_791225
• Protein GI: 28868606

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.341276
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCGCAC CGATCAAAAC CCCGGCCAAA GCGCCACCAG CACCCCAGCG CCCTGCGCCT 
GTCGAGCGGC CAGCCACAGC TCTTAGCGAA AAACCATTCG GTGAAAAACG CCCTGCATCC 
GGTGGCCTGG GCCGTGGCGA TGTACAGACC AGCCGTTCGG TACTGAGCAA GTCGCTGCAA 
GACACCCCGA TGAGTGCCGA CGGCATGTTC TTTTCGCAAC TGCTGGTGCC GCCCGTAAGT 
GCCGAACCTG GTCAGCAAGG CTTTGGCGGG GGCGGTATAG CCTTTCCGGT ACGCGCAGAA 
CAAGTGCCGA CCCAACTGAT CGACGAGCTG GCGCAGCGCC TGCCGGATCA GCCTGACGGC 
CCCCTCAGTT TCACCCTGCT GATGCCCAGC CTGGGCAGCG TTCGGGTCAA TGCCAACAAA 
ACCGAAAACC GCTGGAGCGT GCAGTTGGGC TTTGCCCGCC GCGATGTACT CAAGCGTCTG 
AGTGCCCATA CGGGCGCATG CCGCGACTCG CTGTCACAAG CGCTTGGGCA GGACGTTGAG 
CTGGACATGC ATGAAGACCT TTCAGCATGA 

 

Protein sequence

MTAPIKTPAK APPAPQRPAP VERPATALSE KPFGEKRPAS GGLGRGDVQT SRSVLSKSLQ 
DTPMSADGMF FSQLLVPPVS AEPGQQGFGG GGIAFPVRAE QVPTQLIDEL AQRLPDQPDG 
PLSFTLLMPS LGSVRVNANK TENRWSVQLG FARRDVLKRL SAHTGACRDS LSQALGQDVE 
LDMHEDLSA