| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1394 |
|---|
| Symbol | hrcS |
|---|
| ID | 1183030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1533964 |
|---|
| End bp | 1534230 |
|---|
| Gene Length | 267 bp |
|---|
| Protein Length | 88 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637392766 |
|---|
| Product | type III secretion protein HrcS |
|---|
| Protein accession | NP_791221 |
|---|
| Protein GI | 28868602 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4794] Type III secretory pathway, component EscS |
|---|
| TIGRFAM ID | [TIGR01403] type III secretion protein, HrpO family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCGT TGGCGTTGTT CAAGCAAGGC ATGTTTCTGG TGGTGATCCT GACCGCTCCG
CCACTGGGCG TTGCGGTGCT GGTGGGGGTG ATCACCTCGC TGTTGCAGGC ACTCATGCAG
ATTCAGGATC AGACCCTGCC GTTCGGTATC AAACTGGCGG CAGTGGGCAT GACGCTGGCC
ATGACCGGTC GCTGGATCGG AGTCGAACTG ATCCAGTTCA TCAACATGGC TTTCGATCTT
ATCGCCCGCT CTGGAGTCGT CCACTAG
|
|---|
| Protein sequence | MEALALFKQG MFLVVILTAP PLGVAVLVGV ITSLLQALMQ IQDQTLPFGI KLAAVGMTLA
MTGRWIGVEL IQFINMAFDL IARSGVVH
|
|---|
| |