| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1391 |
|---|
| Symbol | hrpV |
|---|
| ID | 1183027 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1531192 |
|---|
| End bp | 1531551 |
|---|
| Gene Length | 360 bp |
|---|
| Protein Length | 119 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637392763 |
|---|
| Product | negative regulator of hrp expression HrpV |
|---|
| Protein accession | NP_791218 |
|---|
| Protein GI | 28868599 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAGG TAACGGAAAA GTCGGCATTT TACGCTCAGG TTGCCGCCCA GAGCCCAGCA
GTATGGCCAG TGGCCAATGG CGTCGCGTTT GTCAGTCGGC GCGAACACCA TGATTGGGGG
ATCGCCTTGC ACATAGAAGG CCGCGCGTTG CGTCCCGATC AACTGCGTGA TGCACTGCAA
CGACGTTTTA TGGAGTCAGA GCGTTTCAAT CACTACTTCC TGTTTCTGGA CGTACGACGC
GACTTTGTGG TGTGGCACGC GGTCAACGAA AAACCGGGTT CCTACGCCAG CCTGGACGAC
ATCCGCCGGC ATGAGTTGAT GCTGGCAGGG CTGGACCATT TGAGCGAGGA AATGCACTGA
|
|---|
| Protein sequence | MIEVTEKSAF YAQVAAQSPA VWPVANGVAF VSRREHHDWG IALHIEGRAL RPDQLRDALQ
RRFMESERFN HYFLFLDVRR DFVVWHAVNE KPGSYASLDD IRRHELMLAG LDHLSEEMH
|
|---|
| |