Gene PSPTO_1386 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1386 
SymbolhrpE 
ID1183022 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp1527570 
End bp1528151 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content63% 
IMG OID637392758 
Producttype III secretion protein HrpE 
Protein accessionNP_791213 
Protein GI28868594 
COG category 
COG ID 
TIGRFAM ID[TIGR02499] type III secretion apparatus protein, HrpE/YscL family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCGCCA AACGCAGTAT TGCTCTGACG GCCGCTACGC TGCTGCGCGA ACCGATCTTG 
CGCCGCGAAG ACATCGCCGA CAGCCTGCTG GCGCGCGACA TCCTGGCAGA CGCGCGGCAG 
CAGGCCACGC AGATACTGGC CCTTGAGCAA GAGAAAGCCG AGCACCTTCA GCAGCAGGCG 
CTGGCGCAGT TCTGGGAAAA CGCCAACGCG TTTCTCGGCG AGCTTCAGGT GCAGCGCGAG 
GCGTTGCAGG AGCAGGCAAT GACCGCCGTA GAAGAACTGT TGAGTGAATC CCTGCGGCAC 
TTGTTAGACG ACACCACGCT GGCCGAACGT GCGCGGGCGC TGGCCAGAAA CCTGGCCGCC 
AGCCAGCTCA ATGAAGCGGT CGCGACGCTC AGTGTTCACC CCCAAATAGC CGACGCCGTG 
GCTGAGTGGC TGGCAGACAG CCGTTTTTCC GAGCACTGGC AACTCAAGCG CGATGCAACG 
ATCGCCTCGG ACAGCTTGCG TCTGAGCGAT GCCAATGGCG CGTTCGATAT CGCTTGGGCA 
GACCTGCGCA AGGGGCTGCT GGGTGTCGAG CCTGCTGCCT GA
 
Protein sequence
MLAKRSIALT AATLLREPIL RREDIADSLL ARDILADARQ QATQILALEQ EKAEHLQQQA 
LAQFWENANA FLGELQVQRE ALQEQAMTAV EELLSESLRH LLDDTTLAER ARALARNLAA 
SQLNEAVATL SVHPQIADAV AEWLADSRFS EHWQLKRDAT IASDSLRLSD ANGAFDIAWA 
DLRKGLLGVE PAA