| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1384 |
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| Symbol | hrcJ |
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| ID | 1183020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1526201 |
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| End bp | 1527007 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637392756 |
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| Product | type III secretion protein HrcJ |
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| Protein accession | NP_791211 |
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| Protein GI | 28868592 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4669] Type III secretory pathway, lipoprotein EscJ |
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| TIGRFAM ID | [TIGR02544] type III secretion apparatus lipoprotein, YscJ/HrcJ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGAATTTTC TGAGCGCAGG GCTGCTGCTG TTGTGCATGC TGCTGCTCGG CGGCTGCAGT
GATGAGACTG ATTTGTTCAC TGGCTTGTCC GAGCAGGATT CCAATGAGGT CGTAGCGCGC
CTCGCCGATC AGCATATCGA TGCGCGTAAA CGTCTGGAGA AAACCGGCGT TGTCGTGACT
GTCGCCACCA GCGAAATGAA CCGCGCCGTG CGCGTGCTCG ACGCTGCGGG TCTGCCTCGG
CGCTCGCGCA CCACGCTGGG GGAGATTTTC AAGAAGGAAG GGGTGATTTC GACGCCGCTT
GAAGAGCGTG CCCGTTACAT CTACGCCTTG TCCCAGGAAC TTGAAGCCAC GCTGTCGCAG
ATCGACGGAG TCATTGTGGC CAGGGTGCAT GTGGTGCTGC CCGAGCGCAT CGCGCCGGGC
GAACCTGTTC AACCGGCTTC TGCTGCGGTG TTCATCAAGC ACTCTGCTGC ACTTGATCCC
GACAGTGTGC GCGGACGTAT TCAACAGATG GTCGCCAGCA GTATTCCCGG TATGTCCACG
CAATCTGTCG ATTCGAAAAA GTTTTCCATC GTGTTTGTGC CTGCTGCAGA GTTCCAAGAG
ACCACGCAAT GGGTGAGCTT CGGGCCCTTC AAGCTGGACA GCACGAACTT GCCGTTCTGG
AACCTGATGC TCTGGGTGGC ACCTGTCGGT CTTGCGTTGG TGTTGCTGAT CGGTGCACTG
CTGGTGCGCA GTGACTGGCG CGCCAGTCTG TTGCGACGGA TCGGGTTTGG CAGTCGCGGT
CGTTCAACGC TGCCGGCACG TGCATGA
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| Protein sequence | MNFLSAGLLL LCMLLLGGCS DETDLFTGLS EQDSNEVVAR LADQHIDARK RLEKTGVVVT
VATSEMNRAV RVLDAAGLPR RSRTTLGEIF KKEGVISTPL EERARYIYAL SQELEATLSQ
IDGVIVARVH VVLPERIAPG EPVQPASAAV FIKHSAALDP DSVRGRIQQM VASSIPGMST
QSVDSKKFSI VFVPAAEFQE TTQWVSFGPF KLDSTNLPFW NLMLWVAPVG LALVLLIGAL
LVRSDWRASL LRRIGFGSRG RSTLPARA
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