| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1361 |
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| Symbol | |
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| ID | 1182997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1498345 |
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| End bp | 1500150 |
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| Gene Length | 1806 bp |
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| Protein Length | 601 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637392733 |
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| Product | amidase family protein |
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| Protein accession | NP_791188 |
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| Protein GI | 28868569 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
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| TIGRFAM ID | [TIGR02713] allophanate hydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.73258 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGCAC TCGACATTAA TGAACTTCAG TCGGCGTTAC GCTCGGGTAC AACCACCCTG
GCGACGCTTG TGCACTCCCT GACGATGCAC ATTGATGCAG ATGATCGACC CGAAGTCTGG
ATTTATCGGG TGCCCGCTAC GGACCTGCTT GAAAGAGCAG CCGCACTGGA AGGTATCGCC
GCAGCGCTGG GCGATTCGGT GTATGAGCAA CTGCCGCTGT TCGGTGTGCC GTTTGCGGTC
AAGGACAATT TCGACGTAGC GGGAATGCTC ACCACGGCTG CATGCCCGGC CTTCGCTTAT
ACCGCCAGAG AAAACGCTCA TGTGGTGCAA CGGCTGCTCG ACAGTGGCGC GTTGTTGATC
GGCAAAACCA ATCTCGATCA GTTCGCCACC GGCCTGGTGG GCGTCCGCTC GCCTTACGGC
GCGGTGCGCA ACGCTCACGA TCCGGCCTAT GTGAGCGGCG GTTCCAGTTC AGGGTCCGCT
GTGGCGGTAG CGCGCGGCTA CGTGAGTTTT GCACTGGGCA CCGACACGGC AGGCTCGGGT
CGAGTGCCCG CAGGCTTCAA TGGCATCGTC GGGCTCAAGC CCAGCCTTGG CCTGTTCAGC
AGTCGCGGCG TTGTGCCCGC TTGCCGCACG CTGGACTGCC CGTCGATCTT TGCCACCGAC
GTGATGCAAG CCTGGCAGGT GGCGCAGGTC ATCGCCGCCT ACGATCCGCT GGATTCGGGC
AGTGTGGCCG TGCAGGCCTT GCCGGTGCAG CGCCGGGCCA GGCGCGTGGC GGTTGCACGC
CAGTGCGAGT TCTTCGGAGA CACTCAGGCG CAGGCGGCGT ATTCAAAGGC GCTGGCGGCC
CTGCATGACG ATCCACTGGT GACCCTCAAA GAGATCGAAT TTGACGTGTT CGCCGAAGCG
GCGGCGCTTC TCTATCAAGG CCCGTGGGTG GCCGAACGGC GGGCAGCCGT CGGCAGTTTT
TTTACTGAAA ACGCTGCCGA TGTTCACCCG GTGGTGCGCG GCATCCTGCA GAGCGCTGCG
TCCTTCGATG CCGTCGATGC GTTCAACGCC CGTTATCGCC TGGCCGACCT GACCCGGGCA
GCCGAACACC TATTGGCTGA TGTGGATGTG CTGGTGGTGC CGACTGCGCC GTGCATGCCG
ACCATCGATG CGGTGCTGGA AAACCCCATC GAGCTCAATT CACGGCTCGG CTACTACACC
AACTTCGTCA ACCTGATGAA TATGTGCGCC ATCGCCATCC CGGCAATCGC TCGTGCTGAC
GGTTTGCCGG CGGGCATCAC GCTGATAGGA CCGGCGGGTG CCGATCAGCG GCTCGCAGAG
TTCGCCGCTG CCTGGCAACC GCTGCTCGGC AAGGCCGACC AGCGCGAGGC CGTCGCGATG
GCGCCCCTGC CCTTTAATGC CCCGACCGTG CAAGTGGCGG TGGTGGGCGC GCACTTGTAC
GGCCAGCCGC TCAACTGGCA GTTGCTGGAA AGCAGCGCGC GCCTGCTGCA GCGCACCACC
ACCAGCGCAG ATTATCGACT CTATGCGCTG GCCAATACGT CTCCGCCAAA ACCGGGTCTG
GTGCGTGTGA CGGCACAAGG CGCAAGCATC GAGGTCGAGG TCTGGGAGAT GCCGTTGAGC
CTGTTCGGCG GCTTTGTCGC CGAGATTCCT GCACCGCTGG GCATCGGCTC GCTGCAATTG
GCCGACGGTC AGTGGGTCAA GGGCTTCATC TGTGAACCCG CAGGCCTTGA AGGCGCGCTG
GACATCACTG ATTTCAAAGG CTGGCGCGCC TACCGCGCCG CGCAAACATC TTCCATCGCT
CATTGA
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| Protein sequence | MIALDINELQ SALRSGTTTL ATLVHSLTMH IDADDRPEVW IYRVPATDLL ERAAALEGIA
AALGDSVYEQ LPLFGVPFAV KDNFDVAGML TTAACPAFAY TARENAHVVQ RLLDSGALLI
GKTNLDQFAT GLVGVRSPYG AVRNAHDPAY VSGGSSSGSA VAVARGYVSF ALGTDTAGSG
RVPAGFNGIV GLKPSLGLFS SRGVVPACRT LDCPSIFATD VMQAWQVAQV IAAYDPLDSG
SVAVQALPVQ RRARRVAVAR QCEFFGDTQA QAAYSKALAA LHDDPLVTLK EIEFDVFAEA
AALLYQGPWV AERRAAVGSF FTENAADVHP VVRGILQSAA SFDAVDAFNA RYRLADLTRA
AEHLLADVDV LVVPTAPCMP TIDAVLENPI ELNSRLGYYT NFVNLMNMCA IAIPAIARAD
GLPAGITLIG PAGADQRLAE FAAAWQPLLG KADQREAVAM APLPFNAPTV QVAVVGAHLY
GQPLNWQLLE SSARLLQRTT TSADYRLYAL ANTSPPKPGL VRVTAQGASI EVEVWEMPLS
LFGGFVAEIP APLGIGSLQL ADGQWVKGFI CEPAGLEGAL DITDFKGWRA YRAAQTSSIA
H
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