| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1354 |
|---|
| Symbol | |
|---|
| ID | 1182990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1491241 |
|---|
| End bp | 1491918 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637392726 |
|---|
| Product | isochorismatase family protein |
|---|
| Protein accession | NP_791181 |
|---|
| Protein GI | 28868562 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1335] Amidases related to nicotinamidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGCA TCAGTGCGCG CCCCGACACT TTTACCTTCG AGCCATCGCG TACCGCTGTG
GTGATCATCG ACATGCAGCG CGACTTTCTC GAACCCGGCG GCTTTGGTGC TGCGCTGGGC
AACGACGTCG CCCCGCTGCA AGCCATCGTG CCCACCGTGC AGCAACTGCT GGCGCTGGCT
CGCGAACAGG GTCTTGTAGT CATTCATACC CGAGAGTCTC ACCTCCCGGA CCTGTCCGAC
TGCCCGCAAG CCAAACTCGA CCACGGTTTA CCGGGCCTGC GCATCGGCGA CCCCGGCCCG
ATGGGGCGCA TTCTGGTTCG CGGTGAACCC GGCAACCAGA TCATCGACGC CCTGACGCCG
CTTGCCAGCG AGTGGGTCAT CGACAAACCG GGCAAAGGCA TGTTTTTCGC CACCGATCTG
CAGCAACGGC TCACTGTTGC GGGAATCACT CATCTGATCT TCGCCGGCGT CACCACCGAA
GTGTGCGTGC AGACCAGCAT GCGCGAAGCC TGCGACCTGG GTTATCGCTG CCTGCTGATC
GAAGACGCGA CCGAAAGCTA CTTTGCGGCC TTCAAACAGG CCACTCTGGA CATGATCACC
GCGCAAGGTG CGATTGTCGG GCGAGTTGCC TCGCTCGCCA ATCTGCAGCA CGCCCTGCAC
ACAAGGAGTA CGCAGTAA
|
|---|
| Protein sequence | MISISARPDT FTFEPSRTAV VIIDMQRDFL EPGGFGAALG NDVAPLQAIV PTVQQLLALA
REQGLVVIHT RESHLPDLSD CPQAKLDHGL PGLRIGDPGP MGRILVRGEP GNQIIDALTP
LASEWVIDKP GKGMFFATDL QQRLTVAGIT HLIFAGVTTE VCVQTSMREA CDLGYRCLLI
EDATESYFAA FKQATLDMIT AQGAIVGRVA SLANLQHALH TRSTQ
|
|---|
| |