| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1348 |
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| Symbol | |
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| ID | 1182984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1480410 |
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| End bp | 1482701 |
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| Gene Length | 2292 bp |
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| Protein Length | 763 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637392720 |
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| Product | sensory box/GGDEF domain/EAL domain protein |
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| Protein accession | NP_791175 |
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| Protein GI | 28868556 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCATC TGGGCGATGA GCGTGGTCAG ATTACACCTT CAGTTTTTGC ATCTTCAAAT
CATGCTTTTT CAAATCACGC GTCATCAAAT CATGACGGCA TGACAGAGGT ATTGAAGGCC
GCCGTTCAAT GCGCGTCGTG CTCATCAGGC ACGCTGATGG TGCCCGGTGT ATCTGGCTGG
GAGCAAAGTG CAAGTTTCGG TGCATTTAGC CATTGTGCCG ACGAGGCGTG GCTGAGAACA
ATTTCGTCTT ACGGCGATGT TGTATGCGTG GGTCTGGACA GCCCTGATGA ACATCCACAA
GGCAGTGCCG ACACAGGCAC CTTGATCTAC GTCGCCATAC GCGGCTCCAT GCACCAATTG
CTGGGCGCAC TTGTGCTCAG CAGTACCCAC CTTGAAGCCG GATTGAGCGT TGCGCAAAGG
TACGCGCTGC AAACCCATGC CGCTCACTTA CGCACCTTTC TGCGGCCCGG CGACGAGCCC
GAAACGGTCG GCTCGGCCGT GGGTTCCATT GAAAGGCTGC GCCTGCTTGA ATCGGTGGTC
ATCAATGCCA ATGACGCCAT TCTTATTACC GAAGCCGAGC CGATTGACCT GCCCGGGCCG
CGTATCGTGT ATTGCAACCC GGCCTTTCTG GCGATAACCG GTTTTACCGA AGAAGAAGTC
ATCGGCCGCA CACCACGCAT ACTCCAGTGC GAGGACACCA GTCGCGAAAC ACTGGATGTT
ATTCGCGAAG CGCTGACTCA CTGGAGACCG GTCGAAGTTG AACTCATCAA CACCCGCAAG
GACGGCAGTC AGTTCTGGGT CGAGTTGAGC ATTGTTCCGG TGGCCAACGA GAAAGGCTGG
TTCACCCATT GGGTTTCGGT GCAGCGCGAT ATAACCGAAC GCAAAGAGTC TCAGCAGTTG
ACTCAGCGGG CGCGTCTGGA ATGGGAAGAG AAGCTGGCGC TACAGAGCAG GCTGCAAGAG
CGCGAGCGTA TCTCCGAGGA GCTGGCTTAT ATCGCCTTCC ACGATGAACT GACGGCCCTG
TTCAACCGCG CCTATCTCAT GAATGAACTG GCCGACGCCT TCAGCAACCC TGATCACCAC
TACGAACGTG CAACGGTGCT CTTTCTGGAC CTGGACGGGT TCAAGGTCGT CAACGACAGC
ATGGGCCATC TGGCCGGCGA TCAACTGCTC AAGCGTGTCG CAAACCGATT GCAGAACTGT
GTCCGTGCAA ACGATGTACT GGCGCGAATT GGTGGCGATG AGTTTGCCAT ATTGCTGGTA
GGCAAGGATC AGCCCGAGAC CGCGGTAAAG ATGGCCGAGC GCATTGTCAG TCAATTGCAC
GCGGCCATCG AGATTGAAGG TCAGGACATT TTCATATCGT GCAGCATCGG CATTGTCACG
GCAGGCGAAG GTCATTCAAA GCCCGAGGAC TTGCTGCGTG ATGCAGACGT GGCCATGTAC
TCCGCCAAGA AACAAGGCCG GGGACGCTGG AGCCTTTTCA ATGCTTCGAT GCGCGAGGCG
GCGATTGATA CGCTGGTCAT CCAGAACGCA TTGCGCCAAG CGCTGGAAAA CAAGGATTTT
CTGGTGTTCT ACCAGCCCAT TTACAGCGGC GACAGTGAGC ACCTGGTGGG CGTCGAGGCC
CTGGTTAGAT GGGATCACCC GTCCATGGGC ATTATTTCAC CCGATGCGTT CATCCCCATT
GCCGAAGACC TGGGGCTTAT TCATGAGCTG GGCGCGTGGG TCATGCACAA GGCCTGCGGC
GATGTTCAGG CATGGAGGAA AGCGTTCCCT CATCTGGACC TGAGACTCAA TGTGAACGTG
TCCGGAAAAG AGCTGAGCCG CCCCGGTTTC GTTGATCAGG TCACTCGAAT AATCGCAACA
ACCGGTCTGC CTGCTGCACA ACTGCAGATC GAGGTCACCG AGTCGGTTTT CCTCTACCAG
CCGGACGCCA TCGCGGAAGT TCTAAGGCAG ATCCGCCACT TGGGCGTGCG CGTGGCACTG
GACGACTTCG GCACAGGCTA CAGCTCGCTG GGCTACATCG ACCGCTACCC GATCGATGCC
GTAAAGATAG ACCGGTCTTT TGTGTCCCGA ATGATGACCT ACGACCGCAG CCAGGCGATT
GTCAGCAGCA TCCTGTCTCT AGGCCGTGCA CTTGATCTGG AAATAACCGC TGAAGGCGTA
GAGACCGCAG AGCAATACAA CCGCCTGCGT AAAATGGGCT GCCCGTACTT CCAGGGGTAT
TTTCTGAACA GGCCCATGAG GTCAGAAGCG CTGGAGGACG TTATGAGGTC TGCTGCAGTC
TGCGCTGTGT GA
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| Protein sequence | MNHLGDERGQ ITPSVFASSN HAFSNHASSN HDGMTEVLKA AVQCASCSSG TLMVPGVSGW
EQSASFGAFS HCADEAWLRT ISSYGDVVCV GLDSPDEHPQ GSADTGTLIY VAIRGSMHQL
LGALVLSSTH LEAGLSVAQR YALQTHAAHL RTFLRPGDEP ETVGSAVGSI ERLRLLESVV
INANDAILIT EAEPIDLPGP RIVYCNPAFL AITGFTEEEV IGRTPRILQC EDTSRETLDV
IREALTHWRP VEVELINTRK DGSQFWVELS IVPVANEKGW FTHWVSVQRD ITERKESQQL
TQRARLEWEE KLALQSRLQE RERISEELAY IAFHDELTAL FNRAYLMNEL ADAFSNPDHH
YERATVLFLD LDGFKVVNDS MGHLAGDQLL KRVANRLQNC VRANDVLARI GGDEFAILLV
GKDQPETAVK MAERIVSQLH AAIEIEGQDI FISCSIGIVT AGEGHSKPED LLRDADVAMY
SAKKQGRGRW SLFNASMREA AIDTLVIQNA LRQALENKDF LVFYQPIYSG DSEHLVGVEA
LVRWDHPSMG IISPDAFIPI AEDLGLIHEL GAWVMHKACG DVQAWRKAFP HLDLRLNVNV
SGKELSRPGF VDQVTRIIAT TGLPAAQLQI EVTESVFLYQ PDAIAEVLRQ IRHLGVRVAL
DDFGTGYSSL GYIDRYPIDA VKIDRSFVSR MMTYDRSQAI VSSILSLGRA LDLEITAEGV
ETAEQYNRLR KMGCPYFQGY FLNRPMRSEA LEDVMRSAAV CAV
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