| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1346 |
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| Symbol | |
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| ID | 1182982 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1477371 |
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| End bp | 1478648 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637392718 |
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| Product | sensory box/GGDEF domain protein |
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| Protein accession | NP_791173 |
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| Protein GI | 28868554 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCTCAT CCAGCCAGCG CCTGGCCTTG CTTGAAGCAG TTGTCGAGCA GTCATTCAAC
GCCGTGTTGA TCACCGATGC CAATCTGGCA AACGGCGGCC CGCTCATCGT TTATGTCAAC
CCGGCGTTCT GCACCATGAC GGGCTATACG GCCGAGGAAC TGATCGGTCT TTCGCCGCGC
ATTTTGCAGG GTGCGGACAC CGACCCGCAG GTTATCGAGC GTCTGCGGCA ATGCCTGAGC
GAACGTCTTT TTTTCGAAGG GTCGACGGTC AATTACCGTG CCGACGGCAG CCCGTATGTC
GTCGAGTGGA AAATCACACC GGTGCGCGAC GATGCGGGCC AGGTCTGCAA CTTTGTGTCA
GTGCAGCAAA ACATCAGCCC GCGCATCCGC GCCGAGCGTG AACAACACTT GCTGGCGCAG
GCGCTGAACG CCGCGTTCGA CCCGATCATC ATTACTGATC GCAACTCCAC CATCGTATTC
GCCAACGAGG CGTTTCAGCT CATAACCGGC TACAGCGCGC CCGAGATCAT TGGGCAAAAC
CCGCGAATGC TACGCTCCGG CAAACACGAC GCGCTGTTTT ATGCGCAGTT CAATGAGTCG
CTCGCGAGCG GCGAGCCCTT TCGCACCACC TTTATCAACA AGCGCAAGGA CGGCTCGCTT
TTCTACGCCG AACACAGTAT TTCCCCGCTG CGTAACGTGG AGGGTGCAAT GACGCATTAC
GTCAGCATCA GTCAGGATGT AACAACTCGC CTGGGGCGCG AGCAGAAGTT GCTGGAGATT
GCCCACAGCG ACACGCTGAC CGGGCTGGAT AACCGAAGAG CAGCGGAACA CACACTTGAG
CGCCTGATCA ATACGGCGCG GATGGCGGGC AAACCGTTCA GCTTCATCAT CTGCGATATC
GACCATTTCA AGTCAGTGAA TGATCGGTAC GGTCATCCTG CCGGCGACAG CGTATTGAAA
AGCGTTGCAG CCATTCTCAA ACACCGGATT CGTGCGTTTG ACGTTGCCGC CCGCTGGGGC
GGTGAAGAGT TTCTGATACT GGTGCCCGAC AGCTCACTGA AACAGGCCGC TGAGCTCGCA
GAACGGGTTC GCAAAGGCGT GGAAAGCCTT GAAATACCTG AAGCAGGCCC GGTAACCATT
TCTCTGGGGG TTGCAGAACT CAGCCCCGGA GAAACGGCTG CGAGCCTCAT TCAGCGCGCG
GACAAGGTGC TGTATCAAGC CAAACGCCTG GGTCGCAACC GCGTCGAGAT TGCTCAGGCT
GATGACCCTG CTTATTGA
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| Protein sequence | MTSSSQRLAL LEAVVEQSFN AVLITDANLA NGGPLIVYVN PAFCTMTGYT AEELIGLSPR
ILQGADTDPQ VIERLRQCLS ERLFFEGSTV NYRADGSPYV VEWKITPVRD DAGQVCNFVS
VQQNISPRIR AEREQHLLAQ ALNAAFDPII ITDRNSTIVF ANEAFQLITG YSAPEIIGQN
PRMLRSGKHD ALFYAQFNES LASGEPFRTT FINKRKDGSL FYAEHSISPL RNVEGAMTHY
VSISQDVTTR LGREQKLLEI AHSDTLTGLD NRRAAEHTLE RLINTARMAG KPFSFIICDI
DHFKSVNDRY GHPAGDSVLK SVAAILKHRI RAFDVAARWG GEEFLILVPD SSLKQAAELA
ERVRKGVESL EIPEAGPVTI SLGVAELSPG ETAASLIQRA DKVLYQAKRL GRNRVEIAQA
DDPAY
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