Gene PSPTO_1346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1346 
Symbol 
ID1182982 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp1477371 
End bp1478648 
Gene Length1278 bp 
Protein Length425 aa 
Translation table11 
GC content58% 
IMG OID637392718 
Productsensory box/GGDEF domain protein 
Protein accessionNP_791173 
Protein GI28868554 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCTCAT CCAGCCAGCG CCTGGCCTTG CTTGAAGCAG TTGTCGAGCA GTCATTCAAC 
GCCGTGTTGA TCACCGATGC CAATCTGGCA AACGGCGGCC CGCTCATCGT TTATGTCAAC
CCGGCGTTCT GCACCATGAC GGGCTATACG GCCGAGGAAC TGATCGGTCT TTCGCCGCGC
ATTTTGCAGG GTGCGGACAC CGACCCGCAG GTTATCGAGC GTCTGCGGCA ATGCCTGAGC
GAACGTCTTT TTTTCGAAGG GTCGACGGTC AATTACCGTG CCGACGGCAG CCCGTATGTC
GTCGAGTGGA AAATCACACC GGTGCGCGAC GATGCGGGCC AGGTCTGCAA CTTTGTGTCA
GTGCAGCAAA ACATCAGCCC GCGCATCCGC GCCGAGCGTG AACAACACTT GCTGGCGCAG
GCGCTGAACG CCGCGTTCGA CCCGATCATC ATTACTGATC GCAACTCCAC CATCGTATTC
GCCAACGAGG CGTTTCAGCT CATAACCGGC TACAGCGCGC CCGAGATCAT TGGGCAAAAC
CCGCGAATGC TACGCTCCGG CAAACACGAC GCGCTGTTTT ATGCGCAGTT CAATGAGTCG
CTCGCGAGCG GCGAGCCCTT TCGCACCACC TTTATCAACA AGCGCAAGGA CGGCTCGCTT
TTCTACGCCG AACACAGTAT TTCCCCGCTG CGTAACGTGG AGGGTGCAAT GACGCATTAC
GTCAGCATCA GTCAGGATGT AACAACTCGC CTGGGGCGCG AGCAGAAGTT GCTGGAGATT
GCCCACAGCG ACACGCTGAC CGGGCTGGAT AACCGAAGAG CAGCGGAACA CACACTTGAG
CGCCTGATCA ATACGGCGCG GATGGCGGGC AAACCGTTCA GCTTCATCAT CTGCGATATC
GACCATTTCA AGTCAGTGAA TGATCGGTAC GGTCATCCTG CCGGCGACAG CGTATTGAAA
AGCGTTGCAG CCATTCTCAA ACACCGGATT CGTGCGTTTG ACGTTGCCGC CCGCTGGGGC
GGTGAAGAGT TTCTGATACT GGTGCCCGAC AGCTCACTGA AACAGGCCGC TGAGCTCGCA
GAACGGGTTC GCAAAGGCGT GGAAAGCCTT GAAATACCTG AAGCAGGCCC GGTAACCATT
TCTCTGGGGG TTGCAGAACT CAGCCCCGGA GAAACGGCTG CGAGCCTCAT TCAGCGCGCG
GACAAGGTGC TGTATCAAGC CAAACGCCTG GGTCGCAACC GCGTCGAGAT TGCTCAGGCT
GATGACCCTG CTTATTGA
 
Protein sequence
MTSSSQRLAL LEAVVEQSFN AVLITDANLA NGGPLIVYVN PAFCTMTGYT AEELIGLSPR 
ILQGADTDPQ VIERLRQCLS ERLFFEGSTV NYRADGSPYV VEWKITPVRD DAGQVCNFVS
VQQNISPRIR AEREQHLLAQ ALNAAFDPII ITDRNSTIVF ANEAFQLITG YSAPEIIGQN
PRMLRSGKHD ALFYAQFNES LASGEPFRTT FINKRKDGSL FYAEHSISPL RNVEGAMTHY
VSISQDVTTR LGREQKLLEI AHSDTLTGLD NRRAAEHTLE RLINTARMAG KPFSFIICDI
DHFKSVNDRY GHPAGDSVLK SVAAILKHRI RAFDVAARWG GEEFLILVPD SSLKQAAELA
ERVRKGVESL EIPEAGPVTI SLGVAELSPG ETAASLIQRA DKVLYQAKRL GRNRVEIAQA
DDPAY