| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1309 |
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| Symbol | |
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| ID | 1182945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1440533 |
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| End bp | 1441699 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637392683 |
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| Product | HlyD family secretion protein |
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| Protein accession | NP_791138 |
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| Protein GI | 28868519 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCAGAT CGACCCTGAC CGTTACCGCC GTAGCCCTGC TGATCACCTG TGCGGCAATC
GCCGGCTGGA AGCTGACACG CCCTGCCACC CTTGCGAAAA ATGTCAGCAC AGCGGTGCCG
GTCAAGGTCA TCACCGTGAG CATGGAGGAC GTGCCTCGTT TCGTGACGGG TATCGGCTCG
GTGCTGTCCC TGCAAAGCGT GGTGATCCGC CCCCAGGTGG ACGGCGTGCT GACCCGCGTA
CTGGTCAGGG AGGGTCAACA GGTCAAGGCC GGCGAATTGC TGGCCACGCT CGACGATCGC
TCCATCCGCG CCTCGCTGGA ACAGACCCGC GCCCAGCTGG CGCAGAGCAA GGCGCAGCTG
GACGTCGCGC AACTGGACCT CAAACGCTAT CGTCAGCTCA CCGAAGACAA CGGCATTTCG
CGTCAGACTT TCGATCAGCA ACAAGCGCTG GTCAGGCAAC TGGCGGCCAC TGCGCAAGGC
AACGAGGCCA GCATCAATGC TGCGCAGGTG CAGCTTTCCT ACACGCAGAT TCGTTCGCCG
GTGACGGGCC GGGTCGGCAT TCGCAATGTC GATGAAGGCA ACTTCATGCG TGTCAGCGAT
GCAGAGGGAT TATTTTCGGT CACGCAGATC GACCCGATTG CCGTCGAGTT TTCCCTGCCA
CAGCAAATGC TGCCGACACT GCAAGGGCTT ATTGCCGCGC ACAGCGCTGC TGCCGTCAAA
GCCTATCAGG GCGATGGGGC AACCAATGGC CTGCTGCTGG GTGAAGGCAC GCTGTCGCTG
ATCGACAATC AGGTGTCGGC AACCACCGGC ACAATCCGCG CCAAGGCCCG GTTCAAAAAC
CCCGGCGAAC AGCTTTGGCC GGGGCAACTG GTCACCGTGA AGATTCAGAC CGGTATCGAA
CTCAACTCGC TCAAGGTGCC ACCCCAGGTG GTACAGCGCG GCATTGACCA GCACTTTGTC
TATCGGGTCA CGGCCAATAA CAAAGTGGAA GTGGTACCGG TCAAGGTTTT GTATCAGGAC
AGCGAGCAGA CATTGATCAG CGGGCCGCAG GCTGGCGACG TGCTGGTCAG TGATGGCCAG
TCGCGATTGA GGCCGGGTTC GACGGTGGAA GTGGTCACCA CACCCGCCAC GGAAGTTGCG
AGCGTGCCCG TGGAGCTGCC ACGATGA
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| Protein sequence | MRRSTLTVTA VALLITCAAI AGWKLTRPAT LAKNVSTAVP VKVITVSMED VPRFVTGIGS
VLSLQSVVIR PQVDGVLTRV LVREGQQVKA GELLATLDDR SIRASLEQTR AQLAQSKAQL
DVAQLDLKRY RQLTEDNGIS RQTFDQQQAL VRQLAATAQG NEASINAAQV QLSYTQIRSP
VTGRVGIRNV DEGNFMRVSD AEGLFSVTQI DPIAVEFSLP QQMLPTLQGL IAAHSAAAVK
AYQGDGATNG LLLGEGTLSL IDNQVSATTG TIRAKARFKN PGEQLWPGQL VTVKIQTGIE
LNSLKVPPQV VQRGIDQHFV YRVTANNKVE VVPVKVLYQD SEQTLISGPQ AGDVLVSDGQ
SRLRPGSTVE VVTTPATEVA SVPVELPR
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