| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1305 |
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| Symbol | |
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| ID | 1182941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1433678 |
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| End bp | 1435186 |
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| Gene Length | 1509 bp |
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| Protein Length | 502 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637392679 |
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| Product | GGDEF domain protein |
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| Protein accession | NP_791134 |
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| Protein GI | 28868515 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.620212 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGTTGT TTGCATCCTC TCGGCAAGCC CGGCTCAAAT GGACCCGTCC GGAGCTTATG
CTGATCGTTG GCAGCTCGGT CTCGATGCTT GCCATTCTGG CGATTGTGGC GTCTTTACTG
GCAAGGGAAC GCGACGACGC AGCGCAGACA GCAGCGCGTG CAGCGGCCAA TATCGTGCAA
TTGATCGATG CCGACGTTTT GCATAACGCA GAACTTTACG ATTCGTCATT GCTGGGCATG
ATGAGCGCAT GGGAGCGCCC GGACCTCAAG GACCTGTCGC CTGAACTGCG ACAACTTGTC
CTGTTTGATC GCTCCACGGC TGCGGCGTAT AAAGGCGATC TGGTACTGCT GGATAACAGG
GGCGAAATAT TGGCTGACTC ACTGTCGGTC ATTCCCCGAA ACGACAATTT TTCCGATCGT
CACTATTTCA GAACTCATGC GCTGGACCCT TCGCTGGATT TGCATGTCAG CCCACCTTAC
AAGACGCGTT GGGGCTACAA GGACTGGTGC ATCAGTTTCA GTCGACGCAT TTCAGGGCCT
GACGGCGAGT TCAAAGGTAT TGTGAGTGCG GCCATGCGCC TGGTGTATTT CAAACACCTG
TTCATGAGCC AGCGCCTGGG CGATGGCAGC AGCATCAACC TGATCAACAC CGATGGCACG
CTGATCGTGC GTTATCCAGA GCTGGAAGGT CAGGATCTGA CCGGCAAGGA CTACAGCCAC
ACGGCCAACT TCCAGCGCAT TCTCAAGGAA GGTGATGGCA GTTTCGCCGC CCTCTCCACG
CAATTGAACT CACGTCGGCT GTACACGTTT TCGCGCGTCG GCAATCTGCC GTTGCTGGTG
GTGATCGGGC AGTCCGAGGA CGAGGTCTAT GCGGTCTGGC ATCGCAATGC CTGGCTGATC
GGCACCGCCA CCAGCCTGTT ATGCCTGGGA ATTGTCTGGC TGACCTGGCT GCTGTGCGGT
GAGTTGCGTC GGCGCCATCG TGCCGAAGAC GAACTGGCCA GCCTGGCCGC AACCGACGGA
TTGACCGGGC TCGACAACCG GCGTCAGCTT GACGAAGCGA TGGAAACCGA GTGGGCGCGC
GCGCAACGTT CCGGTAAATG GCTTTCGCTG CTGATGATTG ATGTCGACCA CTTCAAGGCC
TTCAACGAGC GCCATGGCCA CCAGGGCGGT GACGAGGCCT TGCGGCGAAT TGCGCAAGCT
GTTGCGGGCT CCATTCGCCG ACCGGGTGAC CAGCTTGCCC GTTATGGTGG CGAAGAGTTT
GTGGCGGTAC TACCGGAAAC CGACATGAAC GGCGCGCTGG TGATCGCCGA GAAAATTCGC
GCAGCGGTCG AATCCCTGCC GCGTTATGCC GATGACGAAC AGCCGATCAC CGTGAGCATC
GGTGTGGCCT CGCAAATCGT AGAGCAGGGC GACAAACTGG CAGCGTTTTT CGGCATCGCC
GACAAGGCGC TCTATCAGGC CAAGCACAAC GGTCGCAATC GGGTCGAGCA GCACGTGGCT
GTGACGTAA
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| Protein sequence | MMLFASSRQA RLKWTRPELM LIVGSSVSML AILAIVASLL ARERDDAAQT AARAAANIVQ
LIDADVLHNA ELYDSSLLGM MSAWERPDLK DLSPELRQLV LFDRSTAAAY KGDLVLLDNR
GEILADSLSV IPRNDNFSDR HYFRTHALDP SLDLHVSPPY KTRWGYKDWC ISFSRRISGP
DGEFKGIVSA AMRLVYFKHL FMSQRLGDGS SINLINTDGT LIVRYPELEG QDLTGKDYSH
TANFQRILKE GDGSFAALST QLNSRRLYTF SRVGNLPLLV VIGQSEDEVY AVWHRNAWLI
GTATSLLCLG IVWLTWLLCG ELRRRHRAED ELASLAATDG LTGLDNRRQL DEAMETEWAR
AQRSGKWLSL LMIDVDHFKA FNERHGHQGG DEALRRIAQA VAGSIRRPGD QLARYGGEEF
VAVLPETDMN GALVIAEKIR AAVESLPRYA DDEQPITVSI GVASQIVEQG DKLAAFFGIA
DKALYQAKHN GRNRVEQHVA VT
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