| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1293 |
|---|
| Symbol | |
|---|
| ID | 1182929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1423086 |
|---|
| End bp | 1423994 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637392667 |
|---|
| Product | glucose ABC transporter, permease protein, putative |
|---|
| Protein accession | NP_791122 |
|---|
| Protein GI | 28868503 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCTG TCGCTGCGAA CAGCAAAGCC TCGCCAATGG ATGCGCTGCA ACGCTGGCTA
CCTAAACTGG TGCTGGCACC CAGTATGTTC ATCGTGCTGG TGGGCTTCTA TGGCTACATC
CTCTGGACAT TCGCGCTGTC GTTCACCAAC TCGACGTTCT TGCCGTCCTA TAAATGGGTC
GGCCTGGCGC AATATGCGCG CCTGATGGAC AACGACCGTT GGTGGGTGGC GAGCAAGAAC
CTTGCTGTGT TTGGCGGCAT GTTCATCGCC ATCAGCCTGC TGATCGGCGT GCTGCTGGCT
ATCCTGCTGG ATCAGCGTAT CCGTCGCGAA GGCGTGATTC GCACTATTTA TCTGTACCCG
ATGGCGCTCT CGATGATCGT CACCGGTACG GCCTGGAAGT GGCTGCTAAA CCCGGGCCTC
GGCCTGGACA AGATGCTGCG CGACTGGGGC TGGGAAGGTT TTCGTCTCGA CTGGCTGGTT
GATCCGGATC GCGTTGTGTA CTGCCTGGTC ATCGCTGCCG TGTGGCAGTC TTCGGGCTTT
GTCATGGCAC TGTTTCTGGC TGGCCTGCGG GGCGTTGATC AGTCGATCAT CCGCGCCGCG
CAAATGGATG GCGCGAGCCT GCCGATGATC TATTGGCGCG TTGTGCTGCC GAGTCTGCGC
CCGGTGTTTT TCAGCGCGGT GATGATTCTG GCGCATATCG CCATCAAGAG TTTTGACCTT
GTAGCGGCAA TGACGGCCGG TGGCCCGGGT TACTCGTCGG ACTTGCCTGC AATGTTCATG
TACTCCTTCA CGTTCAGTCG CGGCCAGATG GGCATGGGTT CGGCGAGCGC CATTCTGATG
CTCGGCGCAA TCCTGGCGAT TCTGGTGCCT TACCTTTACT CCGAGCTGAG GGCCAAACGC
CATGACTAG
|
|---|
| Protein sequence | MSSVAANSKA SPMDALQRWL PKLVLAPSMF IVLVGFYGYI LWTFALSFTN STFLPSYKWV
GLAQYARLMD NDRWWVASKN LAVFGGMFIA ISLLIGVLLA ILLDQRIRRE GVIRTIYLYP
MALSMIVTGT AWKWLLNPGL GLDKMLRDWG WEGFRLDWLV DPDRVVYCLV IAAVWQSSGF
VMALFLAGLR GVDQSIIRAA QMDGASLPMI YWRVVLPSLR PVFFSAVMIL AHIAIKSFDL
VAAMTAGGPG YSSDLPAMFM YSFTFSRGQM GMGSASAILM LGAILAILVP YLYSELRAKR
HD
|
|---|
| |