Gene PSPTO_1287 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1287 
Symbolgap-1 
ID1182923 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp1415258 
End bp1416259 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content60% 
IMG OID637392661 
Productglyceraldehyde 3-phosphate dehydrogenase, type I 
Protein accessionNP_791116 
Protein GI28868497 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTCTCC GTATCGCAAT CAACGGTTTT GGCCGAATCG GCCGCAACGT CCTACGTGCA 
CTGTATACCC AAGGCTACCG GCAGGACCTG CAGGTCGTCG CCATCAACGA TCTTGGCGAC 
AGCGAAATGA ACGCGCACCT GCTGCGTTTC GACACTGTAC ACGGCCCGTT CAGCGGCACC 
GTGGAGTGTG ACAAGGAAAG CCTGACCGTC AATGGTGACC GTATTTCGGT CAGCGCCATT 
CGCAACCCGG CCGAACTGCC GTGGAAAGCG CAGGACATCG ACGTGGTATT CGAATGCACC 
GGCCTGTTCA CCAGCCGCGA CAAGGCTGCC GCGCACCTGA CCGCCGGCGC CCGCAAGGTG 
ATTATCTCAG CACCGGCCAG CGGTGCCGAT GCCACCATCG TCTATGGCGT CAACCACGAC 
ACGCTGCGCC AGTCGCACCA GATCATCTCC AGCGCATCGT GCACCACCAA CTGCCTGGCC 
CCGGTCGCCC AAGTGCTGCA CCGTGAACTG GGTATCGAAA GCGGCCTGAT GACCACCATT 
CATGCCTACA CCAACGACCA GAACCTGATC GACGTCTATC ACACCGACCC GTACCGCGCG 
CGCTCGGCCA CCCAGTCGAT GATCCCGAGC AAGACCGGCG CTGCCGAAGC GGTGGGCCTG 
GTTCTGCCGG AACTGGCGGG CAAGCTCACG GGGATGGCTG TTCGCGTGCC GGTGATCAAC 
GTTTCGCTGG TCGACCTGAC CGTCACCCTG AAGCGTGAAA CCACGGCCGA AGAAGTCAAC 
GCGCTGATGA AAGAAGCCAG CCAGCACTCC AAGGTCCTGG GTTACAACAC CCTGCCGCTG 
GTTTCACACG ACTTCAATCA CAACCCGCTG TCGTCGATTT TCGACGCCAA TCACACCAAA 
GTGAGCGGCA AGTTGCTGAA AGTGCTCTCG TGGTACGACA ACGAATGGGC GTTCTCCAAC 
CGTATGCTCG ACAACTGCCT GGCGCTGCAT AACGCCGAGT AA
 
Protein sequence
MTLRIAINGF GRIGRNVLRA LYTQGYRQDL QVVAINDLGD SEMNAHLLRF DTVHGPFSGT 
VECDKESLTV NGDRISVSAI RNPAELPWKA QDIDVVFECT GLFTSRDKAA AHLTAGARKV 
IISAPASGAD ATIVYGVNHD TLRQSHQIIS SASCTTNCLA PVAQVLHREL GIESGLMTTI 
HAYTNDQNLI DVYHTDPYRA RSATQSMIPS KTGAAEAVGL VLPELAGKLT GMAVRVPVIN 
VSLVDLTVTL KRETTAEEVN ALMKEASQHS KVLGYNTLPL VSHDFNHNPL SSIFDANHTK 
VSGKLLKVLS WYDNEWAFSN RMLDNCLALH NAE