Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1284 |
Symbol | |
ID | 1182920 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1410889 |
End bp | 1413462 |
Gene Length | 2574 bp |
Protein Length | 857 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637392658 |
Product | TonB-dependent outer membrane heme receptor |
Protein accession | NP_791113 |
Protein GI | 28868494 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein [TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCATCCA CGTTCACGCC TGCCGTGCAA AACCGCGCAC GACTCAGACT TTCGCTGCTG ACCGTCGCGG TACTGGGCGC CAGCCTGCAG GCGATTCCTG CCCACGCCGC CGCCGAAACC AACCGGTCCG TGCGCCCTGC AGGCACTTAC AGCTTCTCGA TCGGTCCGCA ATCGCTGGTG TCGGCGCTCA ATGAATTCAG CCGCATCACC GGCTGGCAGG TGGGCGTGTC ATCGGATTTC GCGCAAAACG TCACCTCCCC GGGTGCCCGC GGCAACCTGA GCCCTGCCCA GGCGCTGGAC GCCCTGCTGG CCGGCAGCTC GCTGAGCTAT CGCAACCTGG GCAACAACAA CGCGGTGCTC GAAAAACGCG CCGCGGGCGT GATGGCTCTC GATCAGATCA CCGTCAGCGC CACGCGTCAG GCTCAGGAAG TGGTGACAGT GCCGAGTACC GTCAGCGTGC ATTCGCGTGA ACAGCTGGAT CGCAACAACG TCAATACCAT CCGTGACCTG GTGCGCTACG AGCCGGGTGT TTCGGTCGGC GGTGCTGGCC AGCGCGCAGG CACGACCGGC TATAACATTC GCGGCATCGA CGGTAACCGC ATCATGACTC AGGTCGACGG CGTTGAAGTT CCCGACAGTT TCTTCACCGG GCCTTATGCG CAAACCCACC GCAACTATGT CGACCCGGAG ATCGTCAAGC GCGTCGAAAT CCTCCGCGGC CCTGCCTCGG CGCTGTACGG CAGCAGCGCC ATTGGCGGCG TGGTCAGTTA TTACACACTG GACCCGGATG ACATCATCAA GCCCGGCAAG GATGTCGGCG CGCGCCTCAA GACCGGTTAC AGCTCGGCAG ACGAAAGCTG GCTGAACTCG GCCACCGTCG CAGGTCGTCA GGGCGAGTTC GACGGCTTGC TGCACGTGAG CCAGCGCAAT GGTCACGAAA CCGAATCCTA TGGTGAAACA GGTGGCACAG GCCTGAGCCG TACCGAAGCC AACCCCGAGG ATGCGCGCAG CACCAACGTG CTGGCCAAGC TGGGTTGGAA CTACGCCGAC GGCTCGCGGC TGGCGCTGGC TTACGAAAAG TACAAGGACG ACCGCAACAC CAATCTGAAA AGCGCAGTGG GCGGGCCGTT CACCAATGGC AGCGGGCTGG GCATGTATCA GTCGCGCGAA AGTAACGACA CCATCAGCCG CGAGCGTTTT GGTATAGAAA ACAGCTTTGC CCTCGACAGC CTGCTGGCGG ACAACCTCAA ATGGAGCCTC AATTACCAGA CCGCCAAGAC CGACCAGAGC ACTCAGGAAC GTTACTTCCC GTTTTCCCGC GACGTGTATC GCCAGCGTGA AACGCAGTAC CAGGAAAAAC AGTGGATCTT CGATGCGCAG CTGGATAAAG CATTCTCCAT TGCCAGCACC GACCATGTGC TGACCTACGG CACCACCCTC AAGCAACAGA AAGTCACCGG GCTGCGCAGC GGCAGCGGGA CCTGCGCACG GGTGTTCGGC ACCTGCCGCG TGGTCGGCGC AGACAGCCCG AGCGACCGAC TGGCCGCGAC CAGTGACTTC CCCGACCCGA CCATCACCAG CTATGCACTG TTCGCGCAGG ATCAGATCAG CTGGAAAGAC TGGACCTTTA TGCCCGGCGT ACGCTACGAC CACACCCGGC TCGACCCGAA GTTCACGCCA GAATTTCTCA GGTCGGTCAG CCTCACCGAC CCAAGTCAGG CCAACGACGA AACGCGGACA TGGCACCGCC TGTCGCCCAA GTTCGGCGTG ACCTACGCGT TCAGCGACGC CTACACCTGG TACGGCCAGT ACGCCGAAGG TTTCCGCACC CCATCAGCCA AGGCCCTTTA TGGCCGCTTC GAAAACCCGA CCGCCGGATA CGTGGTAGAG CCCAATCCGA ATCTGGAGCC GGAAACCAGC AAGAGTTATG AAACCGGACT ACGCGGCCGC TTTGAATCCG GCTCGTTCGA CATCGCGGTG TTCCATAACA AGTACCGCGA CTTCATCAAC GAGGACGCCA TCACCCCCGG CTACAGCGAG CTCACGTTCC AGTCCAGCAA CATCAAGCAC GCCACCATGA AAGGCGCTGA AGTCAAAGGG CGCATCAATC TCGACAGCCT CGGTGCGCCG AACGGCCTGT ACAGCCAGGC ATCCGTTGCC TATGTGCATG GCCGCAACAA CGATACCGGC GAGCCGATCA ACAGCGTCAA CCCGCTGACC GGCGTCATCG GCCTGGGGTA TGAGCAGCGA GACTATGGCA GTCAGCTGAG CTGGACGCTG GTCAAACGCA AGACCCGCGT GGATGACAGC AGTTTCCACA GCCCGGACGG CACTTCCAGC CAGTTCAAGA CCCCGGGCTT CGGCATTCTC GACCTGACCG GCTATTACAA GGTCAGCGAC GACGTGACCG TCAATGCCGG CCTCTACAAC CTGACCGACA AGAAGTACTG GCGCTGGGAC GATGTGCGCG GCTACGACGG CGTGGGCGAA GCCGGTGTGA CCGCACCGGC CAACCTGGAT CGCCTGACCC AGCCGGGGCG CAATTTCAGC GTCAATGTGG TGTGGGATAT CTGA
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Protein sequence | MSSTFTPAVQ NRARLRLSLL TVAVLGASLQ AIPAHAAAET NRSVRPAGTY SFSIGPQSLV SALNEFSRIT GWQVGVSSDF AQNVTSPGAR GNLSPAQALD ALLAGSSLSY RNLGNNNAVL EKRAAGVMAL DQITVSATRQ AQEVVTVPST VSVHSREQLD RNNVNTIRDL VRYEPGVSVG GAGQRAGTTG YNIRGIDGNR IMTQVDGVEV PDSFFTGPYA QTHRNYVDPE IVKRVEILRG PASALYGSSA IGGVVSYYTL DPDDIIKPGK DVGARLKTGY SSADESWLNS ATVAGRQGEF DGLLHVSQRN GHETESYGET GGTGLSRTEA NPEDARSTNV LAKLGWNYAD GSRLALAYEK YKDDRNTNLK SAVGGPFTNG SGLGMYQSRE SNDTISRERF GIENSFALDS LLADNLKWSL NYQTAKTDQS TQERYFPFSR DVYRQRETQY QEKQWIFDAQ LDKAFSIAST DHVLTYGTTL KQQKVTGLRS GSGTCARVFG TCRVVGADSP SDRLAATSDF PDPTITSYAL FAQDQISWKD WTFMPGVRYD HTRLDPKFTP EFLRSVSLTD PSQANDETRT WHRLSPKFGV TYAFSDAYTW YGQYAEGFRT PSAKALYGRF ENPTAGYVVE PNPNLEPETS KSYETGLRGR FESGSFDIAV FHNKYRDFIN EDAITPGYSE LTFQSSNIKH ATMKGAEVKG RINLDSLGAP NGLYSQASVA YVHGRNNDTG EPINSVNPLT GVIGLGYEQR DYGSQLSWTL VKRKTRVDDS SFHSPDGTSS QFKTPGFGIL DLTGYYKVSD DVTVNAGLYN LTDKKYWRWD DVRGYDGVGE AGVTAPANLD RLTQPGRNFS VNVVWDI
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