| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1276 |
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| Symbol | gcvP |
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| ID | 1182912 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1399420 |
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| End bp | 1402284 |
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| Gene Length | 2865 bp |
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| Protein Length | 954 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637392651 |
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| Product | glycine dehydrogenase |
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| Protein accession | NP_791106 |
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| Protein GI | 28868487 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
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| TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.42567 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGACC GCATTGAACT GACCACCGCC AACGAATTCA TTGCCCGCCA CATTGGCCCG
CGTGCCGCTG ACGAGCTGGC CATGCTGCAC ACCCTGGGTT TTGACTCCAT TGAAGCACTC
AGCGACAGCG TGATCCCGGA AAGCATCAAG GGCACCAGCG TGCTGAACCT GCCTGCCGGG
CAGAGCGAAG CCGATGCACT GGCCTCCATC AAGGCCATCG CCAGCAAGAA CCAGCTGTTC
AAGACCTACA TCGGTCAGGG TTACTACAAC ACCCACACAC CCGCCCCGAT TCTGCGCAAC
CTGCTGGAAA ACCCGGCCTG GTATACCGCC TACACGCCCT ACCAGCCTGA GATTTCCCAA
GGCCGTCTGG AGTCGCTGCT CAATTTCCAG ACCCTGATCA GCGACCTGAC CGGCCTGCCG
ATTGCCAACG CCTCGCTGCT CGACGAAGCC ACTGCCGCTG CCGAAGCGAT GACGTTCTGC
AAGCGCCTGA GCAAGAACAA AGGCAGCCAG CAGTTCTTCG CCTCCAGCCA CTGCCACCCG
CAGACACTCG ATGTGCTGCG CACTCGCGCC GAGCCGCTGG GCATCACCGT TGTGGTGGCC
GATGAAACCG AACTGGGCGA TGTCAGCGAC TACTTTGGTG CGCTGCTGCA GTACCCGGCC
AGTAATGGCG ACGTATTCGA CTACCGCGAA CTGGCCGAGC GCTTTCACGG GGCAAACGCA
CTGGTGGCGG TCGCCGCCGA CCTGCTGGCC CTGACCCTGC TGACCCCGCC GGGTGAATTC
GGTGCCGACG TGGCCATCGG CAGCGCGCAA CGCTTTGGCG TACCGCTGGG CTTTGGTGGC
CCGCACGCGG CCTATTTCTC GACGCGCGAT GCGTTCAAGC GTGACATGCC GGGCCGTCTG
GTTGGCGTGT CGGTGGATCG CCACGGCAAA CAGGCTCTGC GCCTCGCCAT GCAGACCCGC
GAACAACACA TTCGTCGCGA AAAGGCCACC AGCAACATCT GCACCGCGCA AGTGCTGCTG
GCCAACATCG CCAGCATGTA CGCCGTGTAT CACGGCCCGC GCGGCCTGAC ACAGATCGCC
AATCGTGTGC ACCACCTGAC CGCGATCCTG GCCGAAGGCT TGAGCCAGTT GGGCCTCAAC
GCCGAGCAGG CCTATTTCTT CGACAGCCTG ACTTTGCACA CTGGCGGCCG GACCGCCGCG
CTGCACGCTG CCGCCCGCGC CCGCCACATC AACCTGCGCG AAATCGACGA CCAGCGTCTG
GGCCTGTCGC TTGACGAAAC CACCTCGCAG TCAGCGGTCG AAGTGCTCTG GGACATTTTC
GCCAGCACGG GCCAGACTCT GCCGGACTTC ACCGCATTGG CCGCCAGCGT CAAGTCGCGC
CTGCCAGCAG CCTTGCTGCG CCAGTCGGCG ATCCTCAGCC ACCCGGTGTT CAACCGCTAT
CACTCGGAAA CCGAGCTGAT GCGCTACCTG CGCAAACTGG CCGACAAGGA CCTGGCGCTG
GACCGCACCA TGATCCCGCT CGGCTCGTGC ACCATGAAAC TCAATGCGGC CAGCGAAATG
ATCCCGGTAA CCTGGGCCGA GTTCGGCAAC CTGCACCCGT TCGCCCCCGC CGAGCAAAGC
GCCGGTTACC AGCAACTGAC CGACGAGTTG GAGGCCATGC TCTGCGCCGC CACCGGCTAT
GACGCCATTT CGCTGCAACC CAACGCCGGT TCGCAGGGTG AATACGCCGG CCTGCTGGCC
ATTCGCGCCT ACCACCAGAG CCGTGGCGAT GAACACCGCG ACATCTGCCT GATCCCTTCG
TCGGCCCACG GCACCAACCC GGCGACCGCT AACATGGCCG GCATGCGCGT GGTGGTGACA
GCCTGCGATG CGCGCGGCAA CGTCGACATC GAAGACTTGC GGGCCAAGGC ACTTCAACAC
CGCGAGCAGC TTGCGGCGAT CATGATCACC TACCCGTCGA CCCACGGCGT GTTCGAAGAG
GGCATTCGCG AAATCTGCGG CATCGTTCAT GACAACGGCG GCCAGGTCTA CATCGACGGT
GCCAACATGA ACGCGATGGT TGGCCTTTGC GCTCCGGGCA AGTTCGGCGG CGACGTGTCG
CACCTCAACC TGCACAAGAC CTTCTGCATT CCTCACGGCG GCGGCGGGCC GGGCGTGGGT
CCGATCGGCG TTAAATCGCA CCTCGCACCG TTCATGCCGG GCCACGCACG CATGCAACGC
AAGGAAGGCG CGGTCTGCGC AGCGCCGTTC GGCAGCGCCA GCATCCTGCC GATCACCTGG
ATGTACATCC GCATGATGGG CGGCGAAGGT CTGAAACGCG CCTCGCAATT GGCGATCCTC
AACGCCAACT ACATTTCGCG TCGCCTGGAA GAGCACTACC CGGTGCTGTA CACCGGCACC
AACGGGCTGG TAGCCCACGA ATGCATCCTT GACCTGCGCC CGATCAAAGA CAGCAGCGGC
ATCAGCGTCG ATGACGTGGC CAAACGCCTG ATCGACTTCG GCTTCCATGC CCCGACCATG
TCGTTCCCGG TCGCTGGAAC GTTGATGATC GAGCCGACCG AAAGCGAATC CCGCGAAGAA
CTGGACCGTT TCTGCGACGC CATGATCAAG ATCCGCGAAG AAATCCGCGC AGTCGAAGAC
GGCACCCTGG ACAAAGACGA CAACCCGTTG AAAAACGCCC CGCATACCGC GGCGGAAATC
GTCGGCCAGT GGAGCCATCC TTACAGCCGC GAGCAGGCGG TGTACCCGGT CGATTCGCTG
ATCGAGAACA AGTACTGGCC TCCGGTCGGA CGCGTCGACA ACGTATTCGG TGACCGCAAT
CTGGTCTGTG CCTGCCCTTC CATCGAGAGC TATCAGGAAG CCTGA
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| Protein sequence | MTDRIELTTA NEFIARHIGP RAADELAMLH TLGFDSIEAL SDSVIPESIK GTSVLNLPAG
QSEADALASI KAIASKNQLF KTYIGQGYYN THTPAPILRN LLENPAWYTA YTPYQPEISQ
GRLESLLNFQ TLISDLTGLP IANASLLDEA TAAAEAMTFC KRLSKNKGSQ QFFASSHCHP
QTLDVLRTRA EPLGITVVVA DETELGDVSD YFGALLQYPA SNGDVFDYRE LAERFHGANA
LVAVAADLLA LTLLTPPGEF GADVAIGSAQ RFGVPLGFGG PHAAYFSTRD AFKRDMPGRL
VGVSVDRHGK QALRLAMQTR EQHIRREKAT SNICTAQVLL ANIASMYAVY HGPRGLTQIA
NRVHHLTAIL AEGLSQLGLN AEQAYFFDSL TLHTGGRTAA LHAAARARHI NLREIDDQRL
GLSLDETTSQ SAVEVLWDIF ASTGQTLPDF TALAASVKSR LPAALLRQSA ILSHPVFNRY
HSETELMRYL RKLADKDLAL DRTMIPLGSC TMKLNAASEM IPVTWAEFGN LHPFAPAEQS
AGYQQLTDEL EAMLCAATGY DAISLQPNAG SQGEYAGLLA IRAYHQSRGD EHRDICLIPS
SAHGTNPATA NMAGMRVVVT ACDARGNVDI EDLRAKALQH REQLAAIMIT YPSTHGVFEE
GIREICGIVH DNGGQVYIDG ANMNAMVGLC APGKFGGDVS HLNLHKTFCI PHGGGGPGVG
PIGVKSHLAP FMPGHARMQR KEGAVCAAPF GSASILPITW MYIRMMGGEG LKRASQLAIL
NANYISRRLE EHYPVLYTGT NGLVAHECIL DLRPIKDSSG ISVDDVAKRL IDFGFHAPTM
SFPVAGTLMI EPTESESREE LDRFCDAMIK IREEIRAVED GTLDKDDNPL KNAPHTAAEI
VGQWSHPYSR EQAVYPVDSL IENKYWPPVG RVDNVFGDRN LVCACPSIES YQEA
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