| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1256 |
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| Symbol | |
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| ID | 1182892 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1379352 |
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| End bp | 1380533 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637392631 |
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| Product | amino acid ABC transporter, permease protein |
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| Protein accession | NP_791086 |
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| Protein GI | 28868467 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4597] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAAGC AAATCGTCGC ACCCAAGCAA AAGCTCTCTC TGAGCGATCC GAAAGTGCGC
GCGTGGTTAT TTCAGATCAT CACTGTCGTG GCGGTGATCG CGTTTGGCTG GTTCATTTTC
GACAACACCC AGACCAACCT GCAACACCGT GGTATTACCT CGGGTTTCGG TTTTCTTGAA
AACAGTGCCG GCTTCGGCAT TGCTCAACAC CTGATCGACT ACAGCGAATC GGACACTTAT
GCTCGCGTGT TCGTCATCGG TTTGCTGAAC ACCTTGCTGG TATCGGTTAT CGGTATTGTC
CTGGCGACCT TGCTGGGCTT TGTCATTGGT GTCGCTCGCC TGTCTCCGAA CTGGATGATC
AGCAAGCTGG CAACCGTGTA TGTCGAAGTC TTCCGCAACA TTCCGCCACT GCTGCAAATC
CTGTTCTGGT ACACCGCCGT ATTCCTCACG TTGCCCGGTC CGCGTCAGGC ACATGGTTAT
CTGGACATGT TCTACGTCAG CAGTCGTGGG CTCAACATGC CCGGAGCACT GCCTGCCGAA
GGCGCATGGG CGTTTCTGAT CAGCATCGTG GTCGCGGTGA TCGCGGTTGT GATGATGGTG
CGTTGGGCCA ACAAGCGTTT CGAGGCGACC GGCCAGCCGT TTCACAAGTT CTGGGTCGGC
CTGGCGTTGT TGCTGTCGAT TCCCGGCCTG AGCATGCTGA TCTTCGGCAG CCCGGTGCAC
TGGGAGCTGC CGCAGCTCAA GGGCTTCAAC TTCACCGGCG GCTGGGTGCT GATTCCCGAG
TTGATCTCCC TGACCCTGGC ACTGACGATC TACACCGCAG CCTTCATTGC TGAAATCGTG
CGCTCCGGCA TCAAGTCGGT CAGCCATGGT CAGACCGAGG CCGCCCGTTC GCTGGGGCTG
CGCCCTGGGC CGACACTGCG CAAGGTCATC ATTCCGCAGG CGCTGCGAGT GATCATCCCG
CCGTTGACCA GTCAGTTCCT GAACCTGGCG AAAAACTCGT CGCTGGCAGC AGCCATCGGT
TATCCGGAAA TGGTTTCCCT GTTTGCCGGT ACGGTGCTCA ACCAGACCGG GCAGGCCATT
GAAGTCATTG CCATCACCAT GAGTGTGTAC CTGGCGATCA GTATCAGCAT TTCCATGCTG
ATGAACTGGT ACAACAAGCG CATTGCGCTG ATCGAGCGGT GA
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| Protein sequence | MEKQIVAPKQ KLSLSDPKVR AWLFQIITVV AVIAFGWFIF DNTQTNLQHR GITSGFGFLE
NSAGFGIAQH LIDYSESDTY ARVFVIGLLN TLLVSVIGIV LATLLGFVIG VARLSPNWMI
SKLATVYVEV FRNIPPLLQI LFWYTAVFLT LPGPRQAHGY LDMFYVSSRG LNMPGALPAE
GAWAFLISIV VAVIAVVMMV RWANKRFEAT GQPFHKFWVG LALLLSIPGL SMLIFGSPVH
WELPQLKGFN FTGGWVLIPE LISLTLALTI YTAAFIAEIV RSGIKSVSHG QTEAARSLGL
RPGPTLRKVI IPQALRVIIP PLTSQFLNLA KNSSLAAAIG YPEMVSLFAG TVLNQTGQAI
EVIAITMSVY LAISISISML MNWYNKRIAL IER
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