Gene PSPTO_1215 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1215 
Symbol 
ID1182851 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp1330200 
End bp1331174 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content61% 
IMG OID637392592 
ProductD-isomer specific 2-hydroxyacid dehydrogenase family protein 
Protein accessionNP_791047 
Protein GI28868428 
COG category[C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only 
COG ID[COG1052] Lactate dehydrogenase and related dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.133379 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAA CCGTACTCGC CTTCAGCCGT GTTTCCCCCG AAATGGCCGA GCGCCTGGCG 
CAGGATTTCA ACGTTATCGT GCCCAATCCC AAACAGGGCG ATATCAACGC CCAGTTTGAC 
GAAGCCCTGC CGCACTCCCA CGGGTTGATC GGCGCAGGCC GCAAGCTGGG TCGCGAACAG 
CTGCACAGCG CTACCCAACT GGAAGTGGTT TCCAGTATTT CGGTGGGCTA CGACAACTAC 
GATGTCGACT ACCTGAGCGA GCGCGGCATT CTGCTGACCA ACACGCCGGA TGTACTGACC 
GAAAGCACCG CCGACCTGGG CTTCTCGCTG ATCATGAGCA GCGCCCGCCG AGTTGCCGAA 
CTGGACGCCT ACACCAAGGC CGGACAGTGG ACGCGCAGCA TCGAACAGCC CCATTTCGGC 
ACCGATGTGC ATGGCAAGAC GCTAGGTATC GTCGGCATGG GCAATATCGG CGCAGCCATT 
GCCCGCCGTG GTCGTCTGGG CTTCAACATG CCGATTCTGT ACAGCGGCAA CAGCCGCAAG 
ACTGAACTGG AACAGGAGTT GGGCGCACAG TTTCGCAGCC TGGACCAACT GCTGGCCGAG 
GCAGATTTCG TCTGCCTGGT GGTGCCGTTG AGCGAAAAGA CCAAACACCT GATCGGCCGT 
CGCGAGCTGA GCCTGATGAA GCCTGGCGCC ATTCTGGTCA ACATCGCCCG CGGGCTGATT 
GTCGATGAAC CGGCACTGAT CGAAGCCCTG CAGAACGGCA CTATTCGCGG CGCTGGTCTG 
GACGTCTACG AAAAAGAACC GCTGAGCGAA TCGCCACTGT TCCAGCTCAA GAATGCCGTC 
ACCCTGCCCC ACGTCGGCTC GGCCACCACG GAAACCCGCC AGGCGATGGC CGACCGCGCC 
TACAACAACC TGCGCAGTGC ACTGCTGGGC GAGCGTCCGC AGGATCTGGT CAATCCGCAG 
GTGTGGAAGG GCTGA
 
Protein sequence
MKKTVLAFSR VSPEMAERLA QDFNVIVPNP KQGDINAQFD EALPHSHGLI GAGRKLGREQ 
LHSATQLEVV SSISVGYDNY DVDYLSERGI LLTNTPDVLT ESTADLGFSL IMSSARRVAE 
LDAYTKAGQW TRSIEQPHFG TDVHGKTLGI VGMGNIGAAI ARRGRLGFNM PILYSGNSRK 
TELEQELGAQ FRSLDQLLAE ADFVCLVVPL SEKTKHLIGR RELSLMKPGA ILVNIARGLI 
VDEPALIEAL QNGTIRGAGL DVYEKEPLSE SPLFQLKNAV TLPHVGSATT ETRQAMADRA 
YNNLRSALLG ERPQDLVNPQ VWKG