| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1193 |
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| Symbol | |
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| ID | 1182829 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1305776 |
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| End bp | 1307740 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637392570 |
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| Product | hypothetical protein |
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| Protein accession | NP_791025 |
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| Protein GI | 28868406 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.699708 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGCC CCTTCATCCT GTCGCTGCTG GTGAGCGGCC TGAGCCTTGT TGCGCCGCTC
AGTCAGGCAG AAACACTGCC GTTGCCGTTG ACCGGTCCTG CGTATGCCAT CGCCAACGAG
GCCTACATGG CCTACAACCG CAAGGACTAC GACCTCGCCA TCGCCAAGGC GCGCGAAGCG
TTGCGCCAGC GGGGCGATGC CGAGCAGTTG CACGATCTGA TTGCCCTAGC CGAGCGCGAC
AAATACCGTC GCGACCACCC CCAGCGGTTC CCCAAGGCCC GCGTAAAGCC GGGCTATGTG
GAAGGCAATC AGGCGCTGCG CGCTTATGCC AGGCGTGATT ACGATGGCTC GGCAAACCAT
GCGCGCAAAG CCATTGCACA GGCGCCAAAA AATCTCGATT ACCGCATGAT GCTGATTGAG
GCGCTGCAGC GTCAGCAGCG TCTGGACCAA GCGCAGGTAG CGATCAACGA TGCCGAGCAG
GCAGTCGGTC CACAGCCAGT GCTGACTCGT CGTCGGCAAG CGATTCAGGA GCAGGTGGCG
GTCAACAAGG CTGCCGCTGG CTACAAGGCA CTGGCGCGCG GTGACAATGA AACCGCGGTC
AGCGAAGCGC GTGACGCAGT GCGTAGCTTC CCGAAACAAA TGGCGTATCG GAAACTGCTG
GTCAGCGCTT TGATCGCCCA AGGGCAATAT GCCGAAGCGC GCTCTGCCGC CACCGAGGCG
CTGGCGCTCA ACGGCAACGA TGCCACCCTG CTCGCACAGC GCGGGCAACT GCGCCAACGC
CTCGGCGATC AGGACGGCGC GCGTCAGGAC TTCGCTCAGG CACTCGCTGT GGGTAATCTG
CCGCTGCGCG AGCAGGCTTC GCTGTACGCC GCGATGGGCC AGCCGAAAGA GGCGTTGCAA
CGTCTGCAAA AGGCCCGCGA TGCCGGTCAA CTGCAGCCGG GCGATGAAGT GCAGATTGCC
TACTTCCTCA GCCAGGCGGG CGATGATCGC GGAGCACTTG CCGAATTCAA ACGGGTTGAC
CGCAGCAGCG GGCTCAAACC CCGTGAAGTT CAGGATGCGG CTTACAGCGC CATGCGCTCA
TCGGACGACG CGCAGGCCAT CACCTACTTC AAGCGCGTGC TCGAATACCA GCAGGCCGGC
GATTTGCAGA TGCCCGATCA ACAGGTGTTC GATACCCGGC GCGCCGTCTC CGACCTGTCT
CGCGAATGGG GCCTGACCAA CACCACGACC TATCGCGGCG CCAGCACCAG CAGTGGTCTT
AACGGCGCGC CGAGCAGCAC GACCGACAGC GTACAGAACA GCACCGAAGT GTTCTGGCGG
CCATTAGGCT ACCGCAATGC GCGTTTCGTC GAGCTTTATG GCCGGGTGAC CGACACGCTG
TGGAGCAAGG ATGGCGACTC CGACACCGGC GCGGACGCAC TTCAGGGCGC GCTGGGTATC
CGCGTCAAAC CGTTCAGCGC GGTCAACGTC ATCGGTGCGT TTGAGCGCAC CTTTCCCTTG
GGCAACTCCA ACGCCGACGG CGACTGGCTG GTGCGTCTGG GCTACGGCTC AAGCATCGGC
ACTGATCTGC GGGTCGATGT GCCCAGCTGG TGGACCTCGC AGCTGTACGC TGAAGGCGGG
CGTTATCTGC AGGACAAGCG CAACTACTTC AACACTGAAT GGCAGGTCGG GCGCAGCTTT
CGCCTAGACA GCATCAGCCC GCGATTGGTG GTATTCCCTC ACGTGGTCGC CGCAGTGGAC
TACGATTCGA AGATGCGCAG CGAGGTCGAT AGCCTCGGCC GCAGCAGCAC ATCGTCCGGC
AACGCTGGCG GCATCGGCGT GGGTACGGGT GTGCGCTACT GGTTCCGCGA GGACACGTAC
AAGGCGCCTC AGTCGTATGT CGACTTCTCG CTGCAATACC GCGAGAAAGT CTTTGGCGAT
GACCGCGCAG AAGGCGTATT CGCACGCATG ACATTCTCGT GGTGA
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| Protein sequence | MKRPFILSLL VSGLSLVAPL SQAETLPLPL TGPAYAIANE AYMAYNRKDY DLAIAKAREA
LRQRGDAEQL HDLIALAERD KYRRDHPQRF PKARVKPGYV EGNQALRAYA RRDYDGSANH
ARKAIAQAPK NLDYRMMLIE ALQRQQRLDQ AQVAINDAEQ AVGPQPVLTR RRQAIQEQVA
VNKAAAGYKA LARGDNETAV SEARDAVRSF PKQMAYRKLL VSALIAQGQY AEARSAATEA
LALNGNDATL LAQRGQLRQR LGDQDGARQD FAQALAVGNL PLREQASLYA AMGQPKEALQ
RLQKARDAGQ LQPGDEVQIA YFLSQAGDDR GALAEFKRVD RSSGLKPREV QDAAYSAMRS
SDDAQAITYF KRVLEYQQAG DLQMPDQQVF DTRRAVSDLS REWGLTNTTT YRGASTSSGL
NGAPSSTTDS VQNSTEVFWR PLGYRNARFV ELYGRVTDTL WSKDGDSDTG ADALQGALGI
RVKPFSAVNV IGAFERTFPL GNSNADGDWL VRLGYGSSIG TDLRVDVPSW WTSQLYAEGG
RYLQDKRNYF NTEWQVGRSF RLDSISPRLV VFPHVVAAVD YDSKMRSEVD SLGRSSTSSG
NAGGIGVGTG VRYWFREDTY KAPQSYVDFS LQYREKVFGD DRAEGVFARM TFSW
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