Gene PSPTO_1158 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1158 
Symbol 
ID1182794 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp1271668 
End bp1272324 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content61% 
IMG OID637392537 
Producttranscriptional regulator, TetR family 
Protein accessionNP_790992 
Protein GI28868373 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID[TIGR03613] pyrimidine utilization regulatory protein R 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.91676 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGTCAAGA CCACCCGCGA GCCCAGCGCC ACGTCTCTGA AGCGGCGTAT GCGCCTGATG 
GAAGGCAAGC GCACGCTGAT TCTCGATGCC GCGCTGGAGA TCTTTTCCCG CTACGGCGTG 
CACGGCAGCA GCCTGGATCA GGTCGCGAGC CTGGCGGATG TGTCCAAGAC CAACCTGCTG 
TATTACTTCA GCAGCAAGGA TGACCTTTAC CTGAACGTGC TGCGTCAGTT GCTTGAAGTC 
TGGCTCAGCC CGCTGGTGCA TTTCACCGCC GACAAAGAGC CGGTGCAGGC CATCGGTGCC 
TATATCAAGG CCAAGCTCGA GATGTCCCGC GATCATCCGG CCGAGTCACG GCTGTTCTGC 
ATGGAAGTGA TGCAGGGCGC GCCGCTGATT CAGGGCGAAC TGCAGCACCC GTTGCGCGAT 
ACGGTGCAGG CCAAGGTGGC GGTGATCCAG CACTGGATCG ACAGCGGCCA GTTGGCCCCG 
ATCAACCCGC ATCACCTGAT TTTCACCCTG TGGGCGACCA CTCAGCATTA CGCTGACTTT 
CGCACCCAGG TCGAGGCCGT GACCGGAAAA ACGCTGGATG ATCCGGTGTT TTTCGAGGAA 
GTGCTGGCCA GCCTGCGCAG CATGGTCCTG GATGGCATCC TGCCGCGTAC GGCCTGA
 
Protein sequence
MVKTTREPSA TSLKRRMRLM EGKRTLILDA ALEIFSRYGV HGSSLDQVAS LADVSKTNLL 
YYFSSKDDLY LNVLRQLLEV WLSPLVHFTA DKEPVQAIGA YIKAKLEMSR DHPAESRLFC 
MEVMQGAPLI QGELQHPLRD TVQAKVAVIQ HWIDSGQLAP INPHHLIFTL WATTQHYADF 
RTQVEAVTGK TLDDPVFFEE VLASLRSMVL DGILPRTA